View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_45 (Length: 369)
Name: NF16077_low_45
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 19930967 - 19930603
Alignment:
| Q |
1 |
tcaatgtaattatatgtgtcgatgtcgtgtcgatgtcagatacgtatccgaaaccaggacaagcctactcctaggagtaattgtgtatcatagaacaaaa |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19930967 |
tcaatgtaattatatgtgtcgatatcgtgtcaatgtcagatacgtatccgaaaccaggacaagcctactcctaggagtaattgtgtatcatagaacaaaa |
19930868 |
T |
|
| Q |
101 |
ctagtctccaaaactaaggccatgcctattgacacaaggggaggcccaactaagacttagaaaaggaaatcatcccttaactgaatttcaattttgcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19930867 |
ctagtctccaaaactaaggccatgcctattgacacaaggggaggcccaactaagacttagaaaaggaaatcatcccttaactgaatttgaattttgcaat |
19930768 |
T |
|
| Q |
201 |
cagtttaatctattgttttacatactttcactctactttgaacttgctcaaaggtgaactttaaaggctttgttatgatgtcagttacatgatcatttgt |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19930767 |
cagtttaatcttttgttttacatactttcactctactttgaacttgctcaaaggtgaactttaaaggctttgttatgatgtcagttacatgatcatttgt |
19930668 |
T |
|
| Q |
301 |
gttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtattatctacc |
365 |
Q |
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| T |
19930667 |
gttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacc |
19930603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40742628 - 40742668
Alignment:
| Q |
5 |
tgtaattatatgtgtcgatgtcgtgtcgatgtcagatacgt |
45 |
Q |
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| T |
40742628 |
tgtaattatatgtgtcgatgtcgtgtcggtgtcagacacgt |
40742668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 13134487 - 13134515
Alignment:
| Q |
5 |
tgtaattatatgtgtcgatgtcgtgtcga |
33 |
Q |
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|
| T |
13134487 |
tgtaattatatgtgtcgatgtcgtgtcga |
13134515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 8931622 - 8931588
Alignment:
| Q |
7 |
taattatatgtgtcgatgtcgtgtcgatgtcagat |
41 |
Q |
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| T |
8931622 |
taattatatgtgtcgatgtcgtgtcggtgtcagat |
8931588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 26562726 - 26562758
Alignment:
| Q |
5 |
tgtaattatatgtgtcgatgtcgtgtcgatgtc |
37 |
Q |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
26562726 |
tgtaattatatgtgtcgatgtcgtgtcggtgtc |
26562758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 4287247 - 4287337
Alignment:
| Q |
168 |
aatcatcccttaac-tgaatttcaattttgcaatcagtttaatctattgttttacatactttcactctactttgaacttgctcaaaggtga |
257 |
Q |
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||||||||||||| |||||| |||||||| |||||||||||||||| ||||| | ||||||| |||| ||| | ||||| |||||||| |
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| T |
4287247 |
aatcatcccttaatatgaattgcaattttgtaatcagtttaatctatcattttatacactttcaatctatcttgcagttgctaaaaggtga |
4287337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 41091279 - 41091247
Alignment:
| Q |
5 |
tgtaattatatgtgtcgatgtcgtgtcgatgtc |
37 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
41091279 |
tgtaattatatgtgtcgatgtcgtgtcaatgtc |
41091247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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