View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_49 (Length: 347)

Name: NF16077_low_49
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_49
NF16077_low_49
[»] chr3 (9 HSPs)
chr3 (17-330)||(23139875-23140188)
chr3 (21-320)||(23148591-23148890)
chr3 (20-330)||(23038873-23039183)
chr3 (21-330)||(23145753-23146062)
chr3 (20-318)||(23036002-23036300)
chr3 (20-330)||(23024104-23024414)
chr3 (25-318)||(23016899-23017192)
chr3 (25-330)||(23032551-23032841)
chr3 (248-297)||(22919134-22919183)
[»] scaffold0554 (1 HSPs)
scaffold0554 (15-320)||(6622-6927)
[»] chr6 (1 HSPs)
chr6 (20-320)||(21779645-21779945)
[»] chr1 (3 HSPs)
chr1 (54-331)||(12609771-12610048)
chr1 (56-318)||(12636869-12637131)
chr1 (101-331)||(15885819-15886049)
[»] scaffold0059 (1 HSPs)
scaffold0059 (32-318)||(61997-62283)
[»] chr2 (1 HSPs)
chr2 (162-218)||(2433652-2433708)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 23139875 - 23140188
Alignment:
Q  17 ggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23139875 ggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaa 23139974  T
Q  117 aataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23139975 aataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaa 23140074  T
Q  217 atcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23140075 atcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcgattgcccatgca 23140174  T
Q  317 ttgacgaccacctt 330  Q
    ||||||||||||||    
T  23140175 ttgacgaccacctt 23140188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 23148591 - 23148890
Alignment:
Q  21 acaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaata 120  Q
    |||||||||||||||||||||| ||||| | || |||||||||||| |||||||||| |||||||| | | |||||||| ||||||||||| |||||||     
T  23148591 acaataaaagatcatcttttctcctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatg 23148690  T
Q  121 aaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatca 220  Q
    | |||||||  |||| |||| || ||||| ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| || | |    
T  23148691 atacaacaacattgctagggccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttccggcaccaaaaggaatgtactcgaagtta 23148790  T
Q  221 ctccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattga 320  Q
    ||||||||||||||||||  | || | ||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  23148791 ctccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcattga 23148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 23038873 - 23039183
Alignment:
Q  20 aacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaat 119  Q
    |||||||||||||||||||||||||||| || | |||| ||||| || ||||||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  23038873 aacaataaaagatcatcttttcttctcattgtggctccgaattcatcagtcatatccaagtcttcacttctgattccacttggaagcttccagtcaaaat 23038972  T
Q  120 aaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatc 219  Q
     | |||||||  ||||||||| || ||||| | |||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||| |||     
T  23038973 gatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcataatt 23039072  T
Q  220 actccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattg 319  Q
    ||| |||||||||||||| | | |  | | ||||||||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||| ||||||    
T  23039073 acttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcattg 23039172  T
Q  320 acgaccacctt 330  Q
    || | ||||||    
T  23039173 actatcacctt 23039183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 23145753 - 23146062
Alignment:
Q  21 acaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaata 120  Q
    |||||||||||||||||||||||||||| | || |||||||||||| |||||||||| |||||||| | | |||||||| ||||||||||| |||||||     
T  23145753 acaataaaagatcatcttttcttctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattccactaggaagcttccagtcaaaatg 23145852  T
Q  121 aaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatca 220  Q
    | |||| ||  ||||||||  || ||||| |||| ||||||||||| |||| ||||| |||||||||| ||| ||||||||||||||||||||||| | |    
T  23145853 atacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaagtta 23145952  T
Q  221 ctccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattga 320  Q
    ||||||||||||||||||  | |  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| |||||| |||||||    
T  23145953 ctccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcattga 23146052  T
Q  321 cgaccacctt 330  Q
    | | ||||||    
T  23146053 ctaacacctt 23146062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 23036002 - 23036300
Alignment:
Q  20 aacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaat 119  Q
    ||||||||||| ||||| |||||||||| || | |||||||||| || ||||| ||||||||||||||| | |||||||| ||||||||||| |||||||    
T  23036002 aacaataaaagttcatcctttcttctcattgtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaat 23036101  T
Q  120 aaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatc 219  Q
     | |||||||  | ||||||| ||  |||| |||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||| |     
T  23036102 gatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaagtt 23036201  T
Q  220 actccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcatt 318  Q
    ||||||||| |||||||||| | |  | ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  23036202 actccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 23036300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 23024104 - 23024414
Alignment:
Q  20 aacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaat 119  Q
    |||||||| |||||||||||||| | ||||| ||  ||||||| ||| ||||| ||||||||||||||| | |||||| | |||||||||||||||||||    
T  23024104 aacaataatagatcatcttttctacacactgtgataccaaatttctcagtcatgtccaattcttcacttttgattccattaggaagcttccaatcaaaat 23024203  T
Q  120 aaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatc 219  Q
       |||||||  |||||||||  | ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |     
T  23024204 ggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcgtcccgcaccaaaaggaatatactcaaagtt 23024303  T
Q  220 actccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattg 319  Q
    |||||||||||||||||||    |  | ||||||||||||||||||||  |||||||||| |||||||| ||||||||||| ||||||||||| ||||||    
T  23024304 actccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttggatctcttgcaattgcccaagcattg 23024403  T
Q  320 acgaccacctt 330  Q
    || | ||||||    
T  23024404 actatcacctt 23024414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 25 - 318
Target Start/End: Original strand, 23016899 - 23017192
Alignment:
Q  25 taaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaac 124  Q
    |||||| ||||||||||| |||| || ||||||||||| ||| ||||| |||| ||| |||| | | |||||||  ||||||||||| ||||||| | ||    
T  23016899 taaaaggtcatcttttctcctcattgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatac 23016998  T
Q  125 aacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactcc 224  Q
    |||||  | ||||||| ||||||||||||||||||||| ||| | || || ||||||||||||| |||  |||||||||||||||| || || | |||||    
T  23016999 aacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggcatattcttcttccaccaccaaaaggaatgtattcgaagttactcc 23017098  T
Q  225 ctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcatt 318  Q
    ||||||||||||||  |||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||    
T  23017099 ctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcatt 23017192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 23032551 - 23032841
Alignment:
Q  25 taaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaac 124  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||| || | |||| ||||||| ||||||   |||||| |||| ||||||| | ||    
T  23032551 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 23032650  T
Q  125 aacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactcc 224  Q
    |||||  | || |||| || ||||| |||||||||||||||| | || |||||||||||||||| ||| |||||||| |||||||||||||||| ||| |    
T  23032651 aacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttccggcaccaaagggaatgtactcaaaattacttc 23032750  T
Q  225 ctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattgacgac 324  Q
    ||||||||||||||| | |  | |||||||               ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |     
T  23032751 ctttatagtcaatagcgctgtcgatgaatc---------------tctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactat 23032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 22919134 - 22919183
Alignment:
Q  248 atgaatctctctggataaaatttctctggttcagtccagtagtttggatc 297  Q
    ||||| || ||||||||||||||||  |||||| ||||||||||||||||    
T  22919134 atgaacctttctggataaaatttcttcggttcattccagtagtttggatc 22919183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 6927 - 6622
Alignment:
Q  15 agggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatc 114  Q
    |||| |||||| |||||||||| |||||||||| ||  |||||||||||||| ||||| ||||||||||||||| | |||||||  ||||||||||| ||    
T  6927 agggaaacaatgaaagatcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattccacatggaagcttccagtc 6828  T
Q  115 aaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactca 214  Q
    ||||| | |||||||  | ||||| | || |||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  6827 aaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaaaaggaatgtactca 6728  T
Q  215 aaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatg 314  Q
    |||| || ||||||||||||||||||| |  |  |||||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||| |    
T  6727 aaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaag 6628  T
Q  315 cattga 320  Q
    ||||||    
T  6627 cattga 6622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 21779645 - 21779945
Alignment:
Q  20 aacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaat 119  Q
    |||| ||||||||| | ||||||| ||| || |||||| |||||||| ||||| ||||||||||||||| | || ||||| ||||||||||| |||||||    
T  21779645 aacactaaaagatcgttttttcttttcattgtgactccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaat 21779744  T
Q  120 aaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatc 219  Q
     | |||||||  | |||||||||  ||||| |||||||||||||||| |||| |||||||||||||||| ||| |||||||| ||||||||||||||||     
T  21779745 gatacaacaacatcgcaagggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaatggaatgtactcaaaatt 21779844  T
Q  220 actccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattg 319  Q
    |||||||||| ||||||||  | |  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  21779845 actccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcattg 21779944  T
Q  320 a 320  Q
    |    
T  21779945 a 21779945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 54 - 331
Target Start/End: Original strand, 12609771 - 12610048
Alignment:
Q  54 ctccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatt 153  Q
    ||||||||| ||| ||||| || || || |||| | | |||||| | ||||||||||||||||| | | ||||||    |||||| | ||||||||||||    
T  12609771 ctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatt 12609870  T
Q  154 tctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaat 253  Q
    | ||||||||||| |||| ||||| |||||||||| ||| |||||||| |||||||||||||||| | ||||||| |||||||||| | | || ||||||    
T  12609871 tatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaat 12609970  T
Q  254 ctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcattgacgaccaccttg 331  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||||||| | |||||||    
T  12609971 ctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttg 12610048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 56 - 318
Target Start/End: Original strand, 12636869 - 12637131
Alignment:
Q  56 ccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttc 155  Q
    ||||||| ||| ||||| ||||| || |||| | | |||||| | |||||| |||||||||| | | | |||||   |||||| | |||||||||||||     
T  12636869 ccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaaagtgatataacaacaatgcaagtgccaactcaacattta 12636968  T
Q  156 tcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatct 255  Q
    ||||||||||| || | |||||||||||||||| ||| ||||||||||||||||||||||||| | | ||||| |||||||||| | | || ||||||||    
T  12636969 tcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatct 12637068  T
Q  256 ctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcatt 318  Q
    |||||||| |||  ||||||||||||||||||| |||||||||||  |||||| |||||||||    
T  12637069 ctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatt 12637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 331
Target Start/End: Complemental strand, 15886049 - 15885819
Alignment:
Q  101 ggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaa 200  Q
    |||||| |||||||||| | | |||||||   |||||| | |||||||||||||  |||||||||| |  | || ||||||||||||| ||| | |||||    
T  15886049 ggaagcctccaatcaaagtgatacaacaacaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaa 15885950  T
Q  201 aaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctct 300  Q
    |||||||||||||||||| | |||||||||||||||||| | | || ||||||||||||||||||||  |||||||||||||||| || |||||||||||    
T  15885949 aaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctct 15885850  T
Q  301 cgcaattgcccatgcattgacgaccaccttg 331  Q
      |||| |||||||||||||| | |||||||    
T  15885849 tccaatcgcccatgcattgactatcaccttg 15885819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 318
Target Start/End: Original strand, 61997 - 62283
Alignment:
Q  32 tcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatg 131  Q
    |||||||||||| | ||||  |||||||||| ||| ||||| ||||| ||||||| | | |||||| | ||||||||||||||||| | | |||||||      
T  61997 tcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaaca 62096  T
Q  132 ttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttata 231  Q
    ||||||| | || ||||| | |  ||||||||||| | || |||||||||||||||  ||| |||||||||||||||||||| |||| | |||| || ||    
T  62097 ttgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaaggaatgtactcgaaattattcccgttgta 62196  T
Q  232 gtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcaattgcccatgcatt 318  Q
    ||||||||   | || ||||||||||||||||||||  |||||||||| ||||||||  ||||||||||  | ||||||||||||||    
T  62197 gtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcatt 62283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 2433708 - 2433652
Alignment:
Q  162 caaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaat 218  Q
    ||||| || ||||||| |||||||| | ||| ||||||||||| |||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaat 2433652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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