View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_50 (Length: 346)
Name: NF16077_low_50
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 14499803 - 14500124
Alignment:
| Q |
18 |
taactaatactatcaattatgaaaagggttaatatattctgaatataaataatgtacttgaaagagaaggaagaaagagataacaagacatgtttccagt |
117 |
Q |
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| T |
14499803 |
taactaatacgatcaattatgaaaagggttaatatattctgaatataaataatgtacttgaaagagaaggaagaaagagataacaagacatgtttccagt |
14499902 |
T |
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| Q |
118 |
ctagaatacaaggactgaaactttatcttttatgtttgttagtttattggggcaaaatgggactgatgatttctgttattctttacttttgtgtctgagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14499903 |
ctagaatacaaggactgaaactttatcttttatgtttgttagtttattggggcaaaatgggactgatgatttctgttattctttacttttgtgtctgagt |
14500002 |
T |
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| Q |
218 |
gag----gaggacagataggaattacaattgattctgggtttccaaagttctatctttgctttcagtctctcttcctttctcatttcccaagatgttcta |
313 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14500003 |
gaggagtgaggacagataggaattacaattgattctgggtttccaaagttctatctttgctttcagtctctcttcctttctcatttcccaagatgttcta |
14500102 |
T |
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| Q |
314 |
ttctgagtcagcaacacttcat |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
14500103 |
ttctgagtcagcaacacttcat |
14500124 |
T |
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