View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_51 (Length: 345)
Name: NF16077_low_51
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 45149737 - 45150064
Alignment:
| Q |
1 |
cttcaacgaaatcagtgtccagtgattttgttaaattctccgtgatttcaaacatgcattaagttagttatttgtcttgtgtgaacgtgaaatatgtaac |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45149737 |
cttcaacgaaatcggtgtccagtgattttgttaaattctccgtgatttcaaacatgcattaagttagttatttgtcttgtgtgaacgtgaaatatgtaac |
45149836 |
T |
|
| Q |
101 |
tttgttttcaggttggattggcaatggttgtggtggagagtgttgttacatcgatatatatttcctatgcagaagaccctttattgatttagagatggga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45149837 |
tttgttttcaggttggattggcaatggttgtggtggagagtgttgttacatcgatatatatttcctatgcagaagaccctttattgattcagagatggga |
45149936 |
T |
|
| Q |
201 |
tgctgaatttttcaaccagatgtctgagacactacatcaccgacttcaatataggagtgctcgagacagggactatcgattccatgaggaccctatacga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45149937 |
tgctgaatttttcaaccagatgtctgagacactacatcaccgacttcaatataggagtgctcgagccagggactatcgattccatgaggaccctatacga |
45150036 |
T |
|
| Q |
301 |
gaaaacgcctctatttgaggattcacat |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
45150037 |
gaaaacgcctctatttgaggattcacat |
45150064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 48574611 - 48574938
Alignment:
| Q |
1 |
cttcaacgaaatcagtgtccagtgattttgttaaattctccgtgatttcaaacatgcattaagttagttatttgtcttgtgtgaacgtgaaatatgtaac |
100 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48574611 |
cttcaaagaaatcggtgtccagtgattttgttaaattctccgtgatttcaaacatgcattaagttagttatttgtcttgtgtgaacgtgaaatatgtaac |
48574710 |
T |
|
| Q |
101 |
tttgttttcaggttggattggcaatggttgtggtggagagtgttgttacatcgatatatatttcctatgcagaagaccctttattgatttagagatggga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48574711 |
tttgttttcaggttggattggcaatggttgtggtggagagtgttgttacatcgatatatatttcctatgcagaagaccctttattgattcagagatggga |
48574810 |
T |
|
| Q |
201 |
tgctgaatttttcaaccagatgtctgagacactacatcaccgacttcaatataggagtgctcgagacagggactatcgattccatgaggaccctatacga |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48574811 |
tgctgaatttttcaacaagatgtctgagacactacatcaccgacttcaatataggagtgctcgagacagggactatcgattccatgaggaccctatacga |
48574910 |
T |
|
| Q |
301 |
gaaaacgcctctatttgaggattcacat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
48574911 |
gaaaacgcctctatttgaggattcacat |
48574938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 50298328 - 50298000
Alignment:
| Q |
1 |
cttcaacgaaatcagtgtc-cagtgattttgttaaattctccgtgatttcaaacatgcattaagttagttatttgtcttgtgtgaacgtgaaatatgtaa |
99 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
50298328 |
cttcaacgaaatcagtgtcacggtgattttgttaaattctccgtgattttaaacatgcattaagttagttatttttcttgtgtgaacatgaaataagtaa |
50298229 |
T |
|
| Q |
100 |
ctttgttttcaggttggattggcaatggttgtggtggagagtgttgttacatcgatatatatttcctatgcagaagaccctttattgatttagagatggg |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
50298228 |
atttgttttcaggttggattggcaatggttgtggtggagagtgctgttacatcgatatatatttgctatgcagaagaccctttattgattcagagatggg |
50298129 |
T |
|
| Q |
200 |
atgctgaatttttcaaccagatgtctgagacactacatcaccgacttcaatataggagtgctcgagacagggactatcgattccatgaggaccctatacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
50298128 |
atgctgaatttttcaaccagatgtctgagacactacatcaccgacttcaatataggagtgctcgagccagggactatcgattccatgatgaccctatacg |
50298029 |
T |
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| Q |
300 |
agaaaacgcctctatttgaggattcacat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
50298028 |
agaaaacgcctctatttgaggattcacat |
50298000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 22576723 - 22576875
Alignment:
| Q |
105 |
ttttcaggttggattggcaatggttgtggtggagagtgttgttacatcgatatatatttcctatgcagaagaccctttattgatttagagatgggatgct |
204 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||| || ||||| |||||||| | ||||| |||||||| ||||||||| |||||||||| | |
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| T |
22576723 |
tttttaggttggagtggcaatggttgtggtggaaagtgcagtgacatccatatatatctgttatgcggaagacccattattgattcagagatgggaccat |
22576822 |
T |
|
| Q |
205 |
gaatttttcaaccagatgtctgagacactacatcaccgacttcaatataggag |
257 |
Q |
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|| |||||||||||||| || |||||| | || || ||||||||| ||||||| |
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| T |
22576823 |
gagtttttcaaccagatttccgagacattgcaccagcgacttcaacataggag |
22576875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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