View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_52 (Length: 343)
Name: NF16077_low_52
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 42816461 - 42816777
Alignment:
| Q |
18 |
tgtccaacatacaaaactctagacgagctaagaacaaaaatccacttagatccgtcggttgtgtgtacaaggttattgctttgtttgtaaacaagcttgc |
117 |
Q |
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| T |
42816461 |
tgtccaacatacaaaactctagacgagctaagaacaaaaatccacttagatccgtcggttgtgtgtacaaggttattgctttgtttgtaaacaagcttgc |
42816560 |
T |
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| Q |
118 |
ctccttccacaatcacttcatatgcttccctctctatctgaaaattgcaagcatcaatgttgaagttattaatacaacataaaaatttagtggcaaactt |
217 |
Q |
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| T |
42816561 |
ctccttccacaatcacttcatatgcttccctctctatctgcaaattgcaagcatcaatgttgaagttgttaatacaacataaaaatttagtggcaaactt |
42816660 |
T |
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| Q |
218 |
tgaaaattataaaatagtttgatagtctgaaatgctcatattaactagagttattgaatgcaatgtgggtgaatgaaaaaatttacaggtccaagatagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42816661 |
tgaaaattataaaatagtttgatagtctgaaatgctcatattaactagagttattgaatgcaatgtgggtgaatgaaaaaatttacaggtccaagatagt |
42816760 |
T |
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| Q |
318 |
ttattcgttgcctttgc |
334 |
Q |
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| T |
42816761 |
ttattcgttgcatttgc |
42816777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 6004067 - 6004204
Alignment:
| Q |
20 |
tccaacatacaaaactctagacgagctaagaacaaaaatccacttagatccgtcggttgtgtgtacaaggttattgctttgtttgtaaacaagcttgcct |
119 |
Q |
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|||||||||||||| ||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||| | | ||||||||| | ||| |
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| T |
6004067 |
tccaacatacaaaattctggatgagctaagaacaaaaatccacttagatccttcacaagtgtgtacaaggttcttgctttttctataaacaagccttcct |
6004166 |
T |
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| Q |
120 |
ccttccacaatcacttcatatgcttccctctctatctg |
157 |
Q |
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| T |
6004167 |
tcctctataataacttcatatacttccctttctttctg |
6004204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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