View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_54 (Length: 341)
Name: NF16077_low_54
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 28910411 - 28910621
Alignment:
| Q |
10 |
aacaatatcataaaccttattttcagggtatactttttccttataccaagcaggtctgttttgaaggtcaaaaggaaccagttggatttggtcttgtagt |
109 |
Q |
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| T |
28910411 |
aacaaaatcataaaccttattttcagggtatactttttccttataccaagcaggtctgttttgaaggtcaaaaggaaccagttggatttggtcttgtagt |
28910510 |
T |
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| Q |
110 |
ccctgtagttcaatatcaacaaacggactttttattttgataaattcaacagacagaattaaaaaattgtgatagacaaatcataagaaatagacacttt |
209 |
Q |
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| T |
28910511 |
ccctgtagttcaatatcaacaaacggactttttattttgataaattcaacagacagaattaaaaaattgtgatagacaaatcataagaaatagacacttt |
28910610 |
T |
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| Q |
210 |
atgtaggactc |
220 |
Q |
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| T |
28910611 |
atgcaggactc |
28910621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 28922935 - 28923045
Alignment:
| Q |
21 |
aaaccttattttcagggtatactttttccttataccaagcaggtctgttttgaaggtcaaaaggaaccagttggatttggtcttgtagtccctgtagttc |
120 |
Q |
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| T |
28922935 |
aaaccttattttcaggatatactttttccttgtaccaagcaggcctattttgaaggtcaataggaaccaaatggatattgttttgtagcccctgtagttc |
28923034 |
T |
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| Q |
121 |
aatatcaacaa |
131 |
Q |
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| T |
28923035 |
agtttcaacaa |
28923045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 28910692 - 28910724
Alignment:
| Q |
291 |
cagaaggaagtaacaaccttgtagttcctagtg |
323 |
Q |
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| T |
28910692 |
cagaaggaagtaacaaccttgtagttcctagtg |
28910724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 28915172 - 28915264
Alignment:
| Q |
31 |
ttcagggtatactttttccttataccaagcaggtctgttttgaaggtcaaaaggaaccagttggatttggtcttgtagtccctgtagttcaat |
123 |
Q |
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| T |
28915172 |
ttcaggatatactttttccttgtaccaagcaggcttgtttgaaaggtcgataggtaccaattcgatcttgtcttgcaacccctgtagttcaat |
28915264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 40288990 - 40289081
Alignment:
| Q |
23 |
accttattttcagggtatactttttccttataccaagcaggtctgttttgaaggtcaaaaggaaccagttggatttggtcttgtagtccctg |
114 |
Q |
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| T |
40288990 |
accttgttttctgggtagactttctccttataccaagcaggcctatcttgaaggttaatagaaaccaatttgattttatcttgtagtccctg |
40289081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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