View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_55 (Length: 340)

Name: NF16077_low_55
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_55
NF16077_low_55
[»] chr5 (12 HSPs)
chr5 (126-327)||(41340234-41340434)
chr5 (77-292)||(41341446-41341669)
chr5 (116-290)||(5963675-5963849)
chr5 (126-290)||(34103546-34103710)
chr5 (179-290)||(14168926-14169037)
chr5 (15-79)||(41341697-41341763)
chr5 (170-284)||(13112535-13112649)
chr5 (170-284)||(13042537-13042651)
chr5 (239-290)||(3294931-3294982)
chr5 (218-284)||(13042710-13042776)
chr5 (218-284)||(13112708-13112774)
chr5 (170-211)||(6500893-6500934)
[»] chr6 (10 HSPs)
chr6 (110-292)||(22605241-22605423)
chr6 (164-290)||(21130097-21130223)
chr6 (129-277)||(22605025-22605173)
chr6 (111-284)||(7301569-7301744)
chr6 (117-192)||(9362847-9362922)
chr6 (170-284)||(11637767-11637881)
chr6 (242-284)||(21297251-21297293)
chr6 (239-280)||(7301415-7301456)
chr6 (253-284)||(6250082-6250113)
chr6 (125-168)||(21118923-21118966)
[»] chr7 (12 HSPs)
chr7 (119-290)||(48071378-48071549)
chr7 (128-287)||(8802199-8802358)
chr7 (110-290)||(27391755-27391934)
chr7 (128-290)||(8802485-8802654)
chr7 (216-282)||(11776439-11776505)
chr7 (170-284)||(21416187-21416301)
chr7 (239-282)||(11776179-11776222)
chr7 (170-211)||(9901714-9901755)
chr7 (170-227)||(34218080-34218137)
chr7 (245-282)||(45100184-45100221)
chr7 (168-216)||(1085292-1085340)
chr7 (216-284)||(2463443-2463511)
[»] chr3 (21 HSPs)
chr3 (114-290)||(17731894-17732070)
chr3 (114-290)||(19033125-19033301)
chr3 (153-290)||(16870988-16871125)
chr3 (170-290)||(54017594-54017714)
chr3 (114-273)||(23161913-23162072)
chr3 (156-254)||(17735023-17735121)
chr3 (156-254)||(19036292-19036390)
chr3 (185-284)||(43978636-43978735)
chr3 (126-221)||(16869799-16869894)
chr3 (206-280)||(23162187-23162261)
chr3 (217-290)||(40195913-40195986)
chr3 (135-211)||(16868394-16868470)
chr3 (239-282)||(43481588-43481631)
chr3 (239-290)||(43978984-43979035)
chr3 (226-288)||(16869614-16869676)
chr3 (170-284)||(48127861-48127975)
chr3 (208-292)||(23161830-23161913)
chr3 (242-284)||(23162467-23162509)
chr3 (239-276)||(53981541-53981578)
chr3 (170-214)||(37990685-37990729)
chr3 (128-168)||(40196115-40196155)
[»] chr4 (14 HSPs)
chr4 (129-288)||(1868045-1868204)
chr4 (167-282)||(51681538-51681653)
chr4 (170-281)||(11197227-11197338)
chr4 (172-284)||(10396414-10396526)
chr4 (112-178)||(16559390-16559456)
chr4 (239-284)||(10396129-10396174)
chr4 (168-211)||(44621073-44621116)
chr4 (126-280)||(47680623-47680778)
chr4 (239-290)||(47681151-47681202)
chr4 (241-290)||(16559299-16559348)
chr4 (134-282)||(26473611-26473758)
chr4 (216-284)||(11307382-11307450)
chr4 (170-214)||(34646693-34646737)
chr4 (170-206)||(45496881-45496917)
[»] chr8 (14 HSPs)
chr8 (157-290)||(12156691-12156824)
chr8 (128-285)||(5981737-5981894)
chr8 (134-284)||(5981451-5981602)
chr8 (159-284)||(14028323-14028448)
chr8 (241-282)||(2954342-2954383)
chr8 (241-282)||(2954625-2954666)
chr8 (244-290)||(11576036-11576082)
chr8 (111-178)||(2954494-2954562)
chr8 (168-211)||(6876906-6876949)
chr8 (245-274)||(3671262-3671291)
chr8 (216-269)||(4840531-4840584)
chr8 (239-280)||(29103329-29103370)
chr8 (170-214)||(3669755-3669799)
chr8 (170-214)||(34834944-34834988)
[»] scaffold0014 (1 HSPs)
scaffold0014 (131-286)||(197725-197878)
[»] chr1 (15 HSPs)
chr1 (130-280)||(27686529-27686680)
chr1 (216-290)||(25294879-25294953)
chr1 (129-290)||(4392197-4392358)
chr1 (185-290)||(15327848-15327953)
chr1 (128-196)||(25293589-25293657)
chr1 (111-280)||(26231641-26231809)
chr1 (239-290)||(4392025-4392076)
chr1 (185-282)||(5821726-5821821)
chr1 (253-290)||(25294960-25294997)
chr1 (239-284)||(31973450-31973495)
chr1 (241-284)||(12466281-12466324)
chr1 (170-216)||(24600360-24600406)
chr1 (170-204)||(39066246-39066280)
chr1 (170-211)||(32594762-32594803)
chr1 (239-284)||(34665924-34665969)
[»] chr2 (5 HSPs)
chr2 (174-284)||(13792544-13792654)
chr2 (170-284)||(28226335-28226449)
chr2 (239-284)||(30219996-30220041)
chr2 (217-284)||(35448708-35448775)
chr2 (170-206)||(15689445-15689481)
[»] scaffold0256 (1 HSPs)
scaffold0256 (239-284)||(13367-13412)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 126 - 327
Target Start/End: Complemental strand, 41340434 - 41340234
Alignment:
Q  126 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctta 225  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  41340434 gggagcggcaatgggc-aaacgtccaagaccataagagacttaaacaccacactcttatccaaaatcttaaggcaatgagtgtatgagttccctctctta 41340336  T
Q  226 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaatagctatgacttaagatctcgaagtttgcaatctt 325  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41340335 tatatcttttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaatagctatgacttaggatctcgaagtttgcaatctt 41340236  T
Q  326 tc 327  Q
    ||    
T  41340235 tc 41340234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 41341669 - 41341446
Alignment:
Q  77 gacacagaaatgttgtctttgtataacacggctattgttggggagtccggggagc---------ggcaatgggccaaacgtccatgaccataagagactt 167  Q
    ||||| |||||||||| |||| || ||||| ||||||||||||||| ||||||||         |||||||||||||||||||| ||| |||||||||||    
T  41341669 gacacggaaatgttgtatttgcatcacacgactattgttggggagtacggggagccccaggagcggcaatgggccaaacgtccaggactataagagactt 41341570  T
Q  168 aaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacata 267  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  41341569 aaacaccacattcttaccaaaaaccttaaggcaatgagtgtatgggttccctctcttatatatcctttgtctcctccattcctagtc-atgtgggacata 41341471  T
Q  268 atcactcacacttgattacccaata 292  Q
    |||||||||||||||||||||||||    
T  41341470 atcactcacacttgattacccaata 41341446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 116 - 290
Target Start/End: Complemental strand, 5963849 - 5963675
Alignment:
Q  116 ggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgag-tgtatgagt 214  Q
    |||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| || | || | |||| ||    
T  5963849 ggggagccccgggagcggcaatgggtcaaacgtccaggaccataagagacttaaacaccacactcttacccaaaaccttaaggca-tcagatctatgggt 5963751  T
Q  215 tccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5963750 tccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcacacacacttgattacccaa 5963675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 34103710 - 34103546
Alignment:
Q  126 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctta 225  Q
    ||||||||||||||| |||||||| | | |||||||||| |||||||||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||    
T  34103710 gggagcggcaatgggtcaaacgtctaggtccataagagatttaaacaccacactcttattcaaaaccttaaggcaatgagtttatgagttctctctctta 34103611  T
Q  226 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||||| ||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||    
T  34103610 tatatcctttatttcctccatttctattcgatgtggaacataatcactcacacttgattatccaa 34103546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 14169037 - 14168926
Alignment:
Q  179 tcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacac 278  Q
    ||||| ||||||| ||||| |||||||  |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||    
T  14169037 tcttacccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcccttacac 14168938  T
Q  279 ttgattacccaa 290  Q
    ||||||| ||||    
T  14168937 ttgattatccaa 14168926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 41341763 - 41341697
Alignment:
Q  15 attgtttcaagtccaccaacaca--gtttgatgacttgttctctctactacaccaaacattgtagac 79  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  41341763 attgtttcaagtccaccaacacatagtttgatgacttgttctctctactacaccaaacattgtagac 41341697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 13112649 - 13112535
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||||||||||||||||||||||| || |||| ||  |||||||||||||||   ||| | ||| ||| ||||||||||||||| || ||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattat 13112550  T
Q  270 cactcacacttgatt 284  Q
    |||||||||||||||    
T  13112549 cactcacacttgatt 13112535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 13042651 - 13042537
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||||||||||||||||| ||||| || |||| ||  |||||||||||||||   ||| | ||| ||| ||||||||||||||| || ||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattat 13042552  T
Q  270 cactcacacttgatt 284  Q
    |||||||||||||||    
T  13042551 cactcacacttgatt 13042537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 3294931 - 3294982
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3294931 tcctccattcctagtcgatatgggacataatcactcacacttgattacccaa 3294982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 13042776 - 13042710
Alignment:
Q  218 ctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||||   ||| | ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  13042776 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatt 13042710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 13112774 - 13112708
Alignment:
Q  218 ctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||||   ||| | ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  13112774 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatt 13112708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 6500934 - 6500893
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatg 211  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagtttatg 6500893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 22605241 - 22605423
Alignment:
Q  110 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 209  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||    
T  22605241 attgttggggagccccgggagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacattcttacccaaaaccttaaggcaatgggttta 22605340  T
Q  210 tgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaata 292  Q
    || ||| || |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22605341 tgggtttccactcttatatatcctttgtttcctccattcctagtcgatgtggaacataatcactcacacttgattacccaata 22605423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 21130097 - 21130223
Alignment:
Q  164 acttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtggga 263  Q
    |||||||||||||| ||||||||||||||||||| |||||  | |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  21130097 acttaaacaccacactcttatccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttgtttcctccattcctagtcgatgtggga 21130196  T
Q  264 cataatcactcacacttgattacccaa 290  Q
    |||||||||||||||||||||||||||    
T  21130197 cataatcactcacacttgattacccaa 21130223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 129 - 277
Target Start/End: Original strand, 22605025 - 22605173
Alignment:
Q  129 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 228  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||| || |||||||||||| ||||||| |||| || ||||  |||||||||||||||    
T  22605025 agcggcaatgggccaaatgtccaagaccataagagagttaaacacctcactcttatccaaaagcttaagaaaatgggtttatggattccctctcttatat 22605124  T
Q  229 atcatttgtctcctccattcctagtcgatgtgggacataatcactcaca 277  Q
    ||| ||||| |||||| ||||||||||||||||||||||||||| ||||    
T  22605125 atcctttgtttcctccgttcctagtcgatgtgggacataatcacccaca 22605173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 284
Target Start/End: Original strand, 7301569 - 7301744
Alignment:
Q  111 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaa-ccttaagacaatgagtgt 208  Q
    ||||||||||||  |||||||| |||||||| |||| || | ||||| ||||||||||| |||||| | ||||| |||||| |||||||| | |  || |    
T  7301569 ttgttggggagtttggggagcgacaatgggctaaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtat 7301668  T
Q  209 atgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||| || |||||| |||||||||     | | |||||||  |||||||||||||||||||| ||||||||||||||    
T  7301669 atgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 7301744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 9362847 - 9362922
Alignment:
Q  117 gggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaacc 192  Q
    ||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| | | ||| ||||||||    
T  9362847 gggagccccgggagcggcaatgggacaaacgtccaggaccataagagacttaaacaccatactattacccaaaacc 9362922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 11637767 - 11637881
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| |||||||||||| |||||||||||| || |||| ||  ||||||||||||||    ||| | || || | ||||||||||| |||||| ||    
T  11637767 acaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttggacattat 11637866  T
Q  270 cactcacacttgatt 284  Q
    |||||||||||||||    
T  11637867 cactcacacttgatt 11637881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 21297251 - 21297293
Alignment:
Q  242 tccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  21297251 tccattcctagtcgatgtgggacacaatcactcacacttgatt 21297293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 7301415 - 7301456
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacactt 280  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  7301415 tcctccatttctagtcgatgtgggacataatcactcacactt 7301456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 284
Target Start/End: Complemental strand, 6250113 - 6250082
Alignment:
Q  253 tcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||||||||||||||||||||||    
T  6250113 tcgatgtgggacataatcactcacacttgatt 6250082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 21118923 - 21118966
Alignment:
Q  125 ggggagcggcaatgggccaaacgtccatgaccataagagactta 168  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  21118923 ggggagcggcaatgggccagacgtccaggactataagagactta 21118966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 119 - 290
Target Start/End: Complemental strand, 48071549 - 48071378
Alignment:
Q  119 gagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccc 218  Q
    |||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||    
T  48071549 gagtcccggaagcggcaatgggccaaacgtccaagatcataagagacttaaacatcacactcttatccaaaaccttaagacaataggtttatgagttccc 48071450  T
Q  219 tctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48071449 tctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactgacacttgattacccaa 48071378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 128 - 287
Target Start/End: Complemental strand, 8802358 - 8802199
Alignment:
Q  128 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||| | |||||||||||| |||| |||||||||||||||    
T  8802358 gagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacgctcttactcaaaacataaagacaatgagtttatgggttccctctcttata 8802259  T
Q  228 tatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacc 287  Q
    |||| ||||| |||||||||||| ||  |||||| | |||||||||||||||||||||||    
T  8802258 tatcctttgtttcctccattcctcgttaatgtggaatataatcactcacacttgattacc 8802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 110 - 290
Target Start/End: Original strand, 27391755 - 27391934
Alignment:
Q  110 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 209  Q
    ||||||||||||| ||||||||||||||| ||||||||| || ||| ||||||||||||||||||||| ||||| | ||||||||||| || ||  | ||    
T  27391755 attgttggggagttcggggagcggcaatgagccaaacgttcaagactataagagacttaaacaccacactcttacctaaaaccttaaggcagtggattta 27391854  T
Q  210 tgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    || ||| | | ||||||||||| ||||  ||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  27391855 tgggtttcatgtcttatatatcctttgcttcctccattccta-ttgatgtgggacataatcactcacacttgattatccaa 27391934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 8802654 - 8802485
Alignment:
Q  128 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 227  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| ||||| |||| |||||| ||||||||    
T  8802654 gagcggcaatgggtcaaatgtccatgaccataagagacttaaacaccacactcttacccaaaatcttaaaacagtgagtttatgggttccccctcttata 8802555  T
Q  228 tatcatttgtct-cctccat------tcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||| ||||| | ||||  |      ||||| ||||||||||||||||||||||||||| ||||||||||    
T  8802554 tatcctttgtttccctctcttatatatcctaatcgatgtgggacataatcactcacactagattacccaa 8802485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 11776439 - 11776505
Alignment:
Q  216 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    |||||||||||||||    ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11776439 ccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacacttga 11776505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 21416187 - 21416301
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||| |||||||| |||| ||||| || |||| ||  |||||||||||||||   | | |  |||||  ||||| |||||||||||||||    
T  21416187 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacataat 21416286  T
Q  270 cactcacacttgatt 284  Q
    |||||||||||||||    
T  21416287 cactcacacttgatt 21416301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 11776179 - 11776222
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  11776179 tcctccattcctagttgatgtgggacataatcattcacacttga 11776222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 9901755 - 9901714
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatg 211  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  9901755 acaccacactcttacccaaaaccttaagacaatgagtttatg 9901714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 34218080 - 34218137
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 227  Q
    |||||||| ||||| ||||||||||||||||||| || ||||||| | ||| ||||||    
T  34218080 acaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttata 34218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 45100221 - 45100184
Alignment:
Q  245 attcctagtcgatgtgggacataatcactcacacttga 282  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  45100221 attcctagtcaatgtggaacataatcactcacacttga 45100184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 1085292 - 1085340
Alignment:
Q  168 aaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttc 216  Q
    |||||||||| ||||| ||||||||||||| |||||||| |||| ||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 1085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 2463511 - 2463443
Alignment:
Q  216 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||||||   | | ||||||||| |||  | |||||||||||||| ||||||||||||||    
T  2463511 ccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttgatt 2463443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 17731894 - 17732070
Alignment:
Q  114 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 213  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| |||||  |||||||||||| ||||| || |||| |    
T  17731894 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactcttactcaaaaccttaaggcaatgggtttatggg 17731993  T
Q  214 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17731994 ttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttgattatccaa 17732070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 19033125 - 19033301
Alignment:
Q  114 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 213  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| |||||  |||||||||||| ||||| || |||| |    
T  19033125 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactcttactcaaaaccttaaggcaatgggtttatggg 19033224  T
Q  214 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19033225 ttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttgattatccaa 19033301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 16870988 - 16871125
Alignment:
Q  153 gaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctag 252  Q
    ||||||||||||||||||||| ||| ||||| | ||||||||||| |||||||| |||| ||||||||||||||||||  ||||| ||||||||||| |     
T  16870988 gaccataagagacttaaacacgacactcttacctaaaaccttaaggcaatgagtttatgggttccctctcttatatattctttgtttcctccattccaaa 16871087  T
Q  253 tcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16871088 tcgatgtgggacataatcactcacacttgattacccaa 16871125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 54017594 - 54017714
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||| ||||||||||||| ||||| || ||||  |||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttcttccattcctagtcgatgtgagacataat 54017693  T
Q  270 cactcacacttgattacccaa 290  Q
    |||||||||||||||||||||    
T  54017694 cactcacacttgattacccaa 54017714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 23162072 - 23161913
Alignment:
Q  114 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 213  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||    | |||||| |||||| ||  | || ||||||    
T  23162072 ttggggagtccggggagcgacaatgggccaaacgtccaggaccataagaaaattaaacaccacatctccacccaaaatcttaaggcatcgggtatatgag 23161973  T
Q  214 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcact 273  Q
    |  |||||||||||||||   ||| |||||||||| |||||||||  |||||||||||||    
T  23161972 tcacctctcttatatatctaatgtttcctccattcttagtcgatgcaggacataatcact 23161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 17735023 - 17735121
Alignment:
Q  156 cataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtc 254  Q
    ||||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  17735023 cataagagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 17735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 19036292 - 19036390
Alignment:
Q  156 cataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtc 254  Q
    ||||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  19036292 cataagagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 19036390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 43978636 - 43978735
Alignment:
Q  185 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||| ||||  || |||||||  |||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43978636 ccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgatt 43978735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 16869799 - 16869894
Alignment:
Q  126 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctct 221  Q
    ||||||||||||| || |||  |||| |||| |||||||||||||||||||| ||||   |||||||||||| |||||||| |||| |||||||||    
T  16869799 gggagcggcaatgtgctaaatatccacgaccttaagagacttaaacaccacactcttgctcaaaaccttaaggcaatgagtttatgtgttccctct 16869894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 23162261 - 23162187
Alignment:
Q  206 tgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 280  Q
    ||||||||| ||||||||||||| ||    || ||||||||||||| ||||||||||||||||||||||||||||    
T  23162261 tgtatgagtcccctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactt 23162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 40195913 - 40195986
Alignment:
Q  217 cctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||||||||||||||    || ||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  40195913 cctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcccaa 40195986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 16868394 - 16868470
Alignment:
Q  135 aatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatg 211  Q
    |||||||||||||| ||  || |||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||    
T  16868394 aatgggccaaacgttcagaactataagagacttaaacatcacactcttatccaaaatcttaaggcaatgagtttatg 16868470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 43481631 - 43481588
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  43481631 tcctccattcctagtcgatgtgagacataatcactcacacttga 43481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 43978984 - 43979035
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||||||||| |||||||||||||||||||||||||||| |||||| |||||    
T  43978984 tcctccattcttagtcgatgtgggacataatcactcacatttgatttcccaa 43979035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 16869614 - 16869676
Alignment:
Q  226 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattaccc 288  Q
    |||||| ||||| ||||| ||||||| ||||  ||||||||||||||||||||||||||||||    
T  16869614 tatatcctttgtttcctctattcctaatcgacatgggacataatcactcacacttgattaccc 16869676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 48127861 - 48127975
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||||||||||| ||||  ||||| || |||| ||  ||||||||||||||||   || ||| |||||  |||| |||||| ||||||||    
T  48127861 acaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataat 48127960  T
Q  270 cactcacacttgatt 284  Q
    |||||||| ||||||    
T  48127961 cactcacatttgatt 48127975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 23161913 - 23161830
Alignment:
Q  208 tatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaata 292  Q
    |||||||  |||||||||||||||   | | ||||| |||| |||||||||||| |||||||||||||||||||||| |||||||    
T  23161913 tatgagtcacctctcttatatatctaatatttcctctattcttagtcgatgtgg-acataatcactcacacttgatttcccaata 23161830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 23162467 - 23162509
Alignment:
Q  242 tccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||| || ||||| ||||||||||||||||||||||||||    
T  23162467 tccattcataatcgatatgggacataatcactcacacttgatt 23162509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 53981578 - 53981541
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcac 276  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  53981578 tcctccatttctagtcgatgtgggacttaatcactcac 53981541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 37990685 - 37990729
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 214  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  37990685 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 37990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 40196115 - 40196155
Alignment:
Q  128 gagcggcaatgggccaaacgtccatgaccataagagactta 168  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  40196115 gagcggcaatgggccaaacatctaagaccataagagactta 40196155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 129 - 288
Target Start/End: Complemental strand, 1868204 - 1868045
Alignment:
Q  129 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 228  Q
    ||||||||||||||||||||||| || |||||||||||||| ||  ||| ||||| ||||||| ||||| ||||| || |||| ||||||||||||||||    
T  1868204 agcggcaatgggccaaacgtccaggatcataagagacttaatcataacactcttacccaaaactttaaggcaatgggtttatgggttccctctcttatat 1868105  T
Q  229 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattaccc 288  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1868104 atcatttatttcctccattcttagtcgatgtgggacataatcactcacacttgattaccc 1868045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 51681653 - 51681538
Alignment:
Q  167 taaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacat 266  Q
    ||||||||||| ||||| |||||| |||||| ||||| || ||||||| |||||||||||||||      | ||||| |||||||||| |||||||||||    
T  51681653 taaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatatttcacatttcctcaattcctagtcaatgtgggacat 51681554  T
Q  267 aatcactcacacttga 282  Q
    ||||||| ||||||||    
T  51681553 aatcacttacacttga 51681538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 11197338 - 11197227
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||| |||||||| |||| ||||| || |||| ||  |||||||||||||||    || ||||||||| |||||||||||| | ||||||    
T  11197338 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataat 11197239  T
Q  270 cactcacacttg 281  Q
    ||||||||||||    
T  11197238 cactcacacttg 11197227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 10396526 - 10396414
Alignment:
Q  172 accacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatca 271  Q
    |||||| |||||||||||||| |||| ||||| || |||| ||  |||||||||||||||     | ||||||||| |||||| || || ||||||||||    
T  10396526 accacactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatgagacataatca 10396427  T
Q  272 ctcacacttgatt 284  Q
    |||||||||||||    
T  10396426 ctcacacttgatt 10396414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 16559456 - 16559390
Alignment:
Q  112 tgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacat 178  Q
    |||||||||||||||||||||||||||| ||||||||  | ||  |||||||||||| |||||||||    
T  16559456 tgttggggagtccggggagcggcaatggaccaaacgtttaggattataagagacttagacaccacat 16559390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 10396174 - 10396129
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||    
T  10396174 tcctccatttcttgtcgatgtgagacataatcactcacacttgatt 10396129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 44621116 - 44621073
Alignment:
Q  168 aaacaccacattcttatccaaaaccttaagacaatgagtgtatg 211  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||    
T  44621116 aaacaccacactcttacccaaaaccttaagacaatgagtttatg 44621073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 47680778 - 47680623
Alignment:
Q  126 gggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctt 224  Q
    ||||||| ||||| |  ||||||||| ||||| ||||||||||| |||||||||    | ||||||||||||| ||    || |||| ||  |||||| |    
T  47680778 gggagcgacaatgagttaaacgtccaggaccaataagagacttagacaccacatctccacccaaaaccttaaggcatcaggtatatgggtctcctctcat 47680679  T
Q  225 atatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 280  Q
    ||||||    ||| |||||||||  || ||||||||||||||||||||||||||||    
T  47680678 atatattcaatgtttcctccatttataatcgatgtgggacataatcactcacactt 47680623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 47681202 - 47681151
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||| ||| |||||| ||||||||||||||||||||| ||| |||||    
T  47681202 tcctccatttctaatcgatgcgggacataatcactcacactttatttcccaa 47681151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 16559348 - 16559299
Alignment:
Q  241 ctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||| |||||    
T  16559348 ctccattcctaatcgatgtgtaacataatcgctcacacttgatttcccaa 16559299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 282
Target Start/End: Original strand, 26473611 - 26473758
Alignment:
Q  134 caatgggccaaacgtccatgacc--ataagagacttaaacaccacattcttatcc-aaaaccttaagacaatgagtgtatgagttccctctcttatatat 230  Q
    |||||||| ||||||||| ||||  |||||||||||| ||||||| ||||   || |||||||||| |||    || ||||||| |||||||||||||||    
T  26473611 caatgggctaaacgtccaggaccctataagagacttagacaccac-ttctccacctaaaaccttaaaacatcaggtatatgagt-ccctctcttatatat 26473708  T
Q  231 catttgtctcctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    |   ||| | ||||||||||| ||||||||||  ||||||||||||| ||||    
T  26473709 ccaatgttttctccattcctaatcgatgtggg--ataatcactcacagttga 26473758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 11307382 - 11307450
Alignment:
Q  216 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||||||    || ||||||||| ||||| |||||| |||||| ||| ||||||||||||    
T  11307382 ccctctcttatatatccaaggtttcctccatttctagttgatgtgagacatagtcagtcacacttgatt 11307450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 34646693 - 34646737
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 214  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  34646693 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 34646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 45496917 - 45496881
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagt 206  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  45496917 acaccacactcttacccaaaaccttaagacaatgagt 45496881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 157 - 290
Target Start/End: Original strand, 12156691 - 12156824
Alignment:
Q  157 ataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcga 256  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||| || |||||||||  ||||||||||||| ||||| ||||||||||||| ||||    
T  12156691 ataagagacttaaacatcacactcttacccaaaaccttaagacaatgggtttatgagttctttctcttatatatcttttgtttcctccattcctaatcga 12156790  T
Q  257 tgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||||||||||||||||||||||||    
T  12156791 tgtgggacataatcactcacacttgattacccaa 12156824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 285
Target Start/End: Original strand, 5981737 - 5981894
Alignment:
Q  128 gagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttat 226  Q
    |||||||||||||| |||| || | ||||| ||||||||||| |||||||||    | ||||||||||||| ||||| || |||| || |||||||||||    
T  5981737 gagcggcaatgggctaaacttcaaggaccagtaagagacttagacaccacatctccacccaaaaccttaaggcaatg-gtttatgggtcccctctcttat 5981835  T
Q  227 atatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatta 285  Q
    |||||    || ||||||||||||| | |||||||||||||||| ||||||||||||||    
T  5981836 atatccaacgtttcctccattcctaattgatgtgggacataatccctcacacttgatta 5981894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 284
Target Start/End: Original strand, 5981451 - 5981602
Alignment:
Q  134 caatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatca 232  Q
    |||||||| |||||||||  |||| ||||||||||| ||||||||||   | ||||||||||||| ||    ||  ||| || ||||||||||||||||     
T  5981451 caatgggctaaacgtccagaaccaataagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcc 5981550  T
Q  233 tttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
       || | ||||||||||||||||||||||||||||||||||||||||||||    
T  5981551 aacgttttctccattcctagtcgatgtgggacataatcactcacacttgatt 5981602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 284
Target Start/End: Complemental strand, 14028448 - 14028323
Alignment:
Q  159 aagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatg 258  Q
    |||||||||  ||||  |||||||||||||||  ||||| ||   ||| |||||||   ||||||||||||||   ||| ||||| ||||||||||||||    
T  14028448 aagagacttggacactgcattcttatccaaaattttaaggcatcaagtatatgagtctgctctcttatatatccaatgtttcctctattcctagtcgatg 14028349  T
Q  259 tgggacataatcactcacacttgatt 284  Q
    | ||||||||||||||||||||||||    
T  14028348 taggacataatcactcacacttgatt 14028323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 2954342 - 2954383
Alignment:
Q  241 ctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  2954342 ctccattcctagtcgatgtgggaaataatcactcacacttga 2954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 2954625 - 2954666
Alignment:
Q  241 ctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  2954625 ctccattcctagtctatgtgggacataatcactcacacttga 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 11576082 - 11576036
Alignment:
Q  244 cattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  11576082 cattcttagtcgacgtgggacataatgactcacacttgattacccaa 11576036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 2954494 - 2954562
Alignment:
Q  111 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacc-ataagagacttaaacaccacat 178  Q
    |||||||| || || ||||||||||||||| |||||||||| |||| |||||||||||| || ||||||    
T  2954494 ttgttgggaagccccgggagcggcaatgggtcaaacgtccaggaccaataagagacttagacgccacat 2954562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 6876906 - 6876949
Alignment:
Q  168 aaacaccacattcttatccaaaaccttaagacaatgagtgtatg 211  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  6876906 aaacaccacactcttacccaaaaccctaagacaatgagtgtatg 6876949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 3671262 - 3671291
Alignment:
Q  245 attcctagtcgatgtgggacataatcactc 274  Q
    ||||||||||||||||||||||||||||||    
T  3671262 attcctagtcgatgtgggacataatcactc 3671291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 4840584 - 4840531
Alignment:
Q  216 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    ||||||||||||||||   ||| |||||||||| || |||||||||||||||||    
T  4840584 ccctctcttatatatccaatgtttcctccattcatattcgatgtgggacataat 4840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 29103329 - 29103370
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacactt 280  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  29103329 tcctccattcctagtcgatgtgagacatgattactcacactt 29103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 3669799 - 3669755
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 214  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  3669799 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 3669755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 34834988 - 34834944
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 214  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  34834988 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 34834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 197878 - 197725
Alignment:
Q  131 cggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatat 230  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||  || |||||| |||||  | ||||  |||||||||||||||||    
T  197878 cggcaatgagccaaacgtccaggaccataagagacttaaacaccacactcttatcc--aatcttaaggcaatggatttatggattccctctcttatatat 197781  T
Q  231 catttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattac 286  Q
    | ||||| ||  | |||| |||||||| |||| |||||||||||||| ||||||||    
T  197780 cctttgtttctgctattcttagtcgatatgggtcataatcactcacatttgattac 197725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 27686529 - 27686680
Alignment:
Q  130 gcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 228  Q
    |||||||||| | ||| ||||| ||||| ||||||||||| |||||||| ||||| ||||||||| ||| |||   |  ||||||||  |||||||||||    
T  27686529 gcggcaatggactaaatgtccaagaccaataagagacttagacaccacactcttacccaaaacctcaagtcaacagggatatgagttttctctcttatat 27686628  T
Q  229 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 280  Q
    |||   ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  27686629 atctaatgtttcctccattcctagtcgatgtggaacataatcactcacactt 27686680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 25294879 - 25294953
Alignment:
Q  216 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||||||   ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  25294879 ccctctcttatatatccaatgtttcctccattcctagccaatgtgggacataatcactcacacttgattacccaa 25294953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 290
Target Start/End: Original strand, 4392197 - 4392358
Alignment:
Q  129 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 228  Q
    |||||||||||| |||||||| | |||||||||  ||||| |||||||||    |||||||| |||||| ||    || |||| ||  ||||| ||||||    
T  4392197 agcggcaatgggtcaaacgtcaaggaccataagtcacttatacaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttatat 4392296  T
Q  229 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    |||   ||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  4392297 atccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttgatttcccaa 4392358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 15327953 - 15327848
Alignment:
Q  185 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||| |||||||   || |||| || ||||||||||||||||    || |||||||||||||||||||||| |||||||||||||||||||||||    
T  15327953 ccaaaacctcaagacaacaggtatatgggtcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttgatt 15327854  T
Q  285 acccaa 290  Q
     |||||    
T  15327853 tcccaa 15327848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 25293589 - 25293657
Alignment:
Q  128 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaa 196  Q
    ||||||||||||| ||||| | || ||||||||||||||| ||||||||| ||||| ||||||||||||    
T  25293589 gagcggcaatgggtcaaacatacaggaccataagagacttgaacaccacactcttacccaaaaccttaa 25293657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 280
Target Start/End: Original strand, 26231641 - 26231809
Alignment:
Q  111 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 209  Q
    ||||||||||||||||  ||||||||||||| ||||||    ||||| ||||||||||  |||||||||    | |||||||||||||  |||  || ||    
T  26231641 ttgttggggagtccggaaagcggcaatgggctaaacgttatggaccactaagagacttggacaccacatctccacccaaaaccttaaggtaattggtata 26231740  T
Q  210 tgagttccctctcttatatat--catttgtctcctccattcctagtcgatgtgggacataatcactcacactt 280  Q
    || || |||||||||||||||  ||||    ||||| ||||||| ||||||||||||||||| ||| ||||||    
T  26231741 tgggtcccctctcttatatataacatt----tcctcaattcctaatcgatgtgggacataattacttacactt 26231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 4392025 - 4392076
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||| |||||    
T  4392025 tcctccattcctactcgatgtgggacataatcacttacagttgatttcccaa 4392076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 5821821 - 5821726
Alignment:
Q  185 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttga 282  Q
    ||||||||||||| |||||  |||||||||   ||||||||||||||   ||| ||||||||||    |||||||| |||||||||||||||||||||    
T  5821821 ccaaaaccttaaggcaatg--tgtatgagtcttctctcttatatatccaatgtttcctccattctcgatcgatgtgagacataatcactcacacttga 5821726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 25294960 - 25294997
Alignment:
Q  253 tcgatgtgggacataatcactcacacttgattacccaa 290  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25294960 tcgatgtgggacataatcactcacaattgattacccaa 25294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 31973450 - 31973495
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||    
T  31973450 tcctccatttctagtcggtgtgagacataatcactcacacttgatt 31973495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 12466324 - 12466281
Alignment:
Q  241 ctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  12466324 ctccatttctagttgatgtgggacataatcacttacacttgatt 12466281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 24600360 - 24600406
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttc 216  Q
    |||||||| |||||  ||||||||||||||||||||| |||||||||    
T  24600360 acaccacactcttacacaaaaccttaagacaatgagtttatgagttc 24600406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 39066246 - 39066280
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatga 204  Q
    |||||||| ||||||||||||||||||||||||||    
T  39066246 acaccacactcttatccaaaaccttaagacaatga 39066280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 32594762 - 32594803
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatg 211  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  32594762 acaccacactcttacccaaaaccttaagacaatgagtttatg 32594803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 34665924 - 34665969
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||| ||| ||||||||||||||| |||||||||||||| |||||    
T  34665924 tcctcaatttctagtcgatgtgggatataatcactcacacatgatt 34665969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 13792544 - 13792654
Alignment:
Q  174 cacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcact 273  Q
    |||| ||||| ||||||||| ||| ||||| ||||| | ||  ||||||||||||||||  | | ||||||||| ||||| |||||||||||||||||||    
T  13792544 cacactcttacccaaaacctcaagtcaatgggtgtacgggtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcact 13792643  T
Q  274 cacacttgatt 284  Q
    |||||||||||    
T  13792644 cacacttgatt 13792654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 28226449 - 28226335
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 269  Q
    |||||||| ||||| | |||||| |||||||||| || |||| ||  |||||||||||||||    || ||||||||| |||||||||||||||||| |     
T  28226449 acaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaa 28226350  T
Q  270 cactcacacttgatt 284  Q
    |||||||||||||||    
T  28226349 cactcacacttgatt 28226335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 30219996 - 30220041
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||    
T  30219996 tcctccagttctagtcgatgtgggacataatcgctcacacttgatt 30220041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 35448708 - 35448775
Alignment:
Q  217 cctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||||||||||   || ||||| ||| |||||||||||| ||||||||||  |||||||||||    
T  35448708 cctctcttatatatcaaacgtttcctctatttctagtcgatgtgagacataatcatacacacttgatt 35448775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 15689445 - 15689481
Alignment:
Q  170 acaccacattcttatccaaaaccttaagacaatgagt 206  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  15689445 acaccacatttttacccaaaaccttaagacaatgagt 15689481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 13412 - 13367
Alignment:
Q  239 tcctccattcctagtcgatgtgggacataatcactcacacttgatt 284  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||    
T  13412 tcctccatttctagtcgatgtgtgacttaatcattcacacttgatt 13367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University