View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_61 (Length: 324)
Name: NF16077_low_61
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_61 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 6623036 - 6623345
Alignment:
| Q |
1 |
tcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagtttataaaatcatattcctattgataatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
6623036 |
tcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagtttataaaatcgtattcatattgataatttc |
6623135 |
T |
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| Q |
101 |
cagttttcttcaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaatt |
200 |
Q |
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| T |
6623136 |
cagttttcttgaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaatt |
6623235 |
T |
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| Q |
201 |
ctagactctcctcgagaagttcatgaattcccatcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623236 |
ctagactctcctcgagaagttcatgaattcccctcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaa |
6623335 |
T |
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| Q |
301 |
gtcctttgtt |
310 |
Q |
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|||||||||| |
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| T |
6623336 |
gtcctttgtt |
6623345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 90578 - 90415
Alignment:
| Q |
1 |
tcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagtttataaaatcatattcctattgataatttc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
90578 |
tcaatactgccgtcttctcttggatttcaatgctgttgatgttcttcattcagcaatgcacaacacgagtttataaaatcatattccttcggatgatttc |
90479 |
T |
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| Q |
101 |
cagttttcttcaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatctca |
169 |
Q |
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| T |
90478 |
cagtttt----aagttttgatacataaattagtaaatctttt-cagtggttacatatttttgtatctca |
90415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 90417 - 90327
Alignment:
| Q |
221 |
tcatgaattcccatcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaagtcctttgttc |
311 |
Q |
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| T |
90417 |
tcatgaattcccatccggaatttctcttcaacagcagaactgcaactcttgtctctgaagagtcatcatccttcacttaagtcctttgttc |
90327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 28751782 - 28751910
Alignment:
| Q |
131 |
agtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattc |
230 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| | || | |
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| T |
28751782 |
agtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagttcgtcgatac |
28751881 |
T |
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| Q |
231 |
ccatcctgaatttctcttcagcagcagaa |
259 |
Q |
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| T |
28751882 |
ccatccgaaacttctcttcaacagcagaa |
28751910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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