View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_67 (Length: 311)
Name: NF16077_low_67
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 35413167 - 35413432
Alignment:
| Q |
9 |
gtgtgtgctactgtcattgctgttcttgtgcagcagttcggtttccctatgttggtgtgtctcggcctgttcattggtgaggcacgagtatgcttggtgt |
108 |
Q |
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| T |
35413167 |
gtgtgtgctgctgtcgttgctgttcttgtgcagcagttcggtttccctatgttggtgagtctcggcctgttcattggtgaggcaggggtatgcttggtgt |
35413266 |
T |
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| Q |
109 |
tagcaagtatatctcggcctcatcgcttgatgccatttttatc----------ttgtggtggtggtgttccgtctatatgcggcatctcattatatttat |
198 |
Q |
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| T |
35413267 |
tagcaagtatatctcagcctcatcgcttgatgccatttttatcttgggatgttttggggtggtggtgttccgtctatatgcggcacctcattatacttat |
35413366 |
T |
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| Q |
199 |
tccctttatccgcgagtttttatctgctccttgcatttcctcgacgtgaataaattttgccgtttc |
264 |
Q |
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| T |
35413367 |
tccctttatccgtgagtttttatctgctccttgcagtttctcgatgtgaataaattttgccgtttc |
35413432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 4787930 - 4787843
Alignment:
| Q |
56 |
tatgttggtgtgtctcggcctgttcattggtgaggcacgagtatgcttggtgttagcaagtatatctcggcctcatcgcttgatgcca |
143 |
Q |
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| T |
4787930 |
tatgttggtgagttttggccagttcaaagctgaggcaggggtatgcttggtgctaacaagtatatttcggcctcatttcttgatgcca |
4787843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 11155965 - 11156011
Alignment:
| Q |
208 |
ccgcgagtttttatctgctccttgcatttcctcgacgtgaataaatttt |
256 |
Q |
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| T |
11155965 |
ccgcgagtttttat--gcgccttgcatttactcgacgtgaataaatttt |
11156011 |
T |
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