View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_7 (Length: 622)
Name: NF16077_low_7
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_7 |
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| [»] scaffold1175 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 263 - 515
Target Start/End: Original strand, 35130026 - 35130278
Alignment:
| Q |
263 |
ataaatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctcctcgtcaagtttt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130026 |
ataaatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctcctcgtcaagtttt |
35130125 |
T |
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| Q |
363 |
ctgattccattgagaaagttgaattctctatatgcttctgcatgtttcgttgatttactcaatgaatattccaagtggaaattgcatctggaaaacccca |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130126 |
ctgattccattgagaaagttgaattctctatatgcttctgcatgtttcgttgatttactcaatgaatattccaagtggaaattgcatctggaaaacccca |
35130225 |
T |
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| Q |
463 |
tgaccaaaatgtctgacaacaaaaattgtaaattttcaatagccttgcatttc |
515 |
Q |
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| T |
35130226 |
tgaccaaaatgtctgacaacaaaaattgtaaattttcaatagctttgcatttc |
35130278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 257 - 515
Target Start/End: Original strand, 35137239 - 35137494
Alignment:
| Q |
257 |
attcaaataaatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctcctcgtca |
356 |
Q |
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| T |
35137239 |
attcaaataaatagcatagt---ctactcattcaataggtgcgaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttg |
35137335 |
T |
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| Q |
357 |
agttttctgattccattgagaaagttgaattctctatatgcttctgcatgtttcgttgatttactcaatgaatattccaagtggaaattgcatctggaaa |
456 |
Q |
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| T |
35137336 |
agttttctgattccattgagaaagttgaattctacatatgcttgggcatgtttcattgatttactcaatgaatactccttgtagaagttgcatctggaaa |
35137435 |
T |
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| Q |
457 |
accccatgaccaaaatgtctgacaacaaaaattgtaaattttcaatagccttgcatttc |
515 |
Q |
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| T |
35137436 |
accccataaccaaaatgtctgacaacaaaaattgtaaattttcaatagccttgcatttc |
35137494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 35129832 - 35130027
Alignment:
| Q |
20 |
agagtataaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcaccacaactccataatattgtaaatcaagaaataaaatt |
119 |
Q |
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| T |
35129832 |
agagtataaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcagcacaactccataatattgtaaataaagaaataaaatt |
35129931 |
T |
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| Q |
120 |
acaacattaaacaagttacatttgtcatacatcaatccatgttgtgtctcacatcatcatgcacaattctgctgaattgtttgaacatgttttttcccat |
219 |
Q |
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| T |
35129932 |
acaacattaaacaagttacatttgtcatac----atccatgttgtgtctcacatcatcatgcacaactctgctgaattgtttgaacatgttttttcccat |
35130027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 35137051 - 35137240
Alignment:
| Q |
27 |
aaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcaccacaactccataatattgtaaatcaagaaataaaattacaacat |
126 |
Q |
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| T |
35137051 |
aaccatcccatagttggattgaataagatcatgccaaatagaatttaactctgtaacacacctccataatattttaaatcaagaaataaaattacaacat |
35137150 |
T |
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| Q |
127 |
taaacaagttacatttgtcatacatcaatccatgttgtgtctcacatcatcatgcacaattctgctgaattgtttgaacatgttttttcccat |
219 |
Q |
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| T |
35137151 |
taaacaagttactttttgtactcatacatccatgttgtgtctca---catcatgcactatcctgctcaattgtttgaacatgttttttcccat |
35137240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 553 - 603
Target Start/End: Original strand, 35137723 - 35137773
Alignment:
| Q |
553 |
tagttagatatctatttatgaaacattaccattatctttgcatgagcaatg |
603 |
Q |
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| T |
35137723 |
tagttagatatctatttatgaaacattaccattatctttgcatgagcaatg |
35137773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 553 - 606
Target Start/End: Original strand, 35130314 - 35130367
Alignment:
| Q |
553 |
tagttagatatctatttatgaaacattaccattatctttgcatgagcaatggtt |
606 |
Q |
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| T |
35130314 |
tagttagatatctattaatgaaacattaccactatctttgcatgagcaatggtt |
35130367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 35121968 - 35122013
Alignment:
| Q |
326 |
gttgttccacttttcaatctcctcctcgtcaagttttctgattcca |
371 |
Q |
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| T |
35121968 |
gttgttccacttttcaatctcttcctcattaagttttctaattcca |
35122013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 320 - 423
Target Start/End: Original strand, 14276734 - 14276840
Alignment:
| Q |
320 |
aatgacgttgttccacttttcaatctcctcctcgtcaagt---tttctgattccattgagaaagttgaattctctatatgcttctgcatgtttcgttgat |
416 |
Q |
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||||| || |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || | | |||||| ||||| |
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| T |
14276734 |
aatgaggtcgttccacttttcaatctcctcctcatcaagtgattttctgattcctttgagaaagttgaattctctataagcatttttgtgtttcattgat |
14276833 |
T |
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| Q |
417 |
ttactca |
423 |
Q |
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| T |
14276834 |
ttactca |
14276840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 14276565 - 14276611
Alignment:
| Q |
90 |
ccataatattgtaaatcaagaaataaaattacaacattaaacaagtt |
136 |
Q |
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| T |
14276565 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtt |
14276611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 423
Target Start/End: Complemental strand, 206 - 109
Alignment:
| Q |
329 |
gttccacttttcaatctcctcctcgtcaagt---tttctgattccattgagaaagttgaattctctatatgcttctgcatgtttcgttgatttactca |
423 |
Q |
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| T |
206 |
gttccactttacaatctcctcctcattaagtgattttctgattcctttgagaaagttgaattctctatatgcatttctgtgtttcattgatttactca |
109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 387 - 341
Alignment:
| Q |
90 |
ccataatattgtaaatcaagaaataaaattacaacattaaacaagtt |
136 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
387 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtt |
341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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