View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_70 (Length: 307)
Name: NF16077_low_70
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 30413663 - 30413389
Alignment:
| Q |
16 |
atttcatacactgccataccaatcccagtatcccacaacgctatattaaaactattcaactcatattttactccaatgatctgaaaaatatgcaactcta |
115 |
Q |
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| T |
30413663 |
atttcatacactgccataccaatcccagtatcccacaacgctatattataactattcaactcatattttactccaatgatctgaaaaatatgcaactcta |
30413564 |
T |
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| Q |
116 |
acccacactttttgtcaaaaaagagcaacacttatcactttcatatttatatgaaccaatcttttatttcaatgctaccaaataataatttagctacttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30413563 |
acccacactttttgtcaaaaaagagcaacacttatcactttcatatttatatgaaccaatcttttatttcaatgctaccaaataataattaagctacttt |
30413464 |
T |
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| Q |
216 |
nnnnnnnnttgatgcaacctactttgccacctcaagttcttccaattttgagtagaaaaaataacgaacaaatcc |
290 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30413463 |
aaaaaaaattgatgcaacctactttgccaccttaagttcttccaattttgagtagaaaaaataacgaacaaatcc |
30413389 |
T |
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