View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_71 (Length: 306)
Name: NF16077_low_71
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 42816777 - 42817073
Alignment:
| Q |
1 |
caatttctttcttgaacatatgtcaagattgacnnnnnnnnccatcaccaatatccaaccttcatgtgagcaaaacatgtattaagacattacaaaatat |
100 |
Q |
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| T |
42816777 |
caatttctttcttgaacatatgtcaagattgacttttttt-ccatcaccaatatccaaccttcatgtgagcaaaacatgtattaagacattacaaaatat |
42816875 |
T |
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| Q |
101 |
ggatcaaaattcaaaagttatattcaaatccgtatatactagtgcttgctcagttaatatttaccagtagaaaaagggttgagaactctgacacttaaac |
200 |
Q |
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| T |
42816876 |
ggatcaaaattcaaaagttatattcaaatccgtatatactagtgcttgctcagttaatatttaccagtagaaaaagggttgagaactctgacacttaaac |
42816975 |
T |
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| Q |
201 |
catacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatctgtaaaatataagaaagcattagcctcggtaattttattttctt |
298 |
Q |
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| T |
42816976 |
catacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatctgcaaaatataagaaagcattagcctcggtaagtttattttctt |
42817073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 17493158 - 17493062
Alignment:
| Q |
161 |
ttaccagtagaaaaagggttgagaactctgacacttaaaccatacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatctgt |
257 |
Q |
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| T |
17493158 |
ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatctgt |
17493062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 6005202 - 6005312
Alignment:
| Q |
160 |
tttaccagtagaaaaagggttgagaactctgacacttaaaccatacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatctgtaa |
259 |
Q |
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| T |
6005202 |
tttaccagtagaaaaaaggttgtgagctctggctatggaaccaaacattatagtacaagtgtaaattgtgtccatatcgatgacgtggatcaatctgcaa |
6005301 |
T |
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| Q |
260 |
aatataagaaa |
270 |
Q |
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|||| |||||| |
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| T |
6005302 |
aatacaagaaa |
6005312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 52368612 - 52368672
Alignment:
| Q |
195 |
ttaaaccatacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatct |
255 |
Q |
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| T |
52368612 |
ttaaaccagatatcataatacatatgaagattgtgtccatatcgatgacgcgggtcaatct |
52368672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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