View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_76 (Length: 293)
Name: NF16077_low_76
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 31073174 - 31073442
Alignment:
| Q |
18 |
actgataatgtcgcaatagttatgcgggaaatttttcgttgttacttgagtttgtgtgaccctcgttatcctgcatta-----------------gtaag |
100 |
Q |
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| T |
31073174 |
actgataatatcgcaatagttatgcgggaaatttttcgttgttacttgagtttgtgtgaccctcgttatcctgcattattagataaacatgaatagtaag |
31073273 |
T |
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| Q |
101 |
aaacaaaatatgaatcttttatttactgcaactttagcataaacttgtaacgagtatcagttcaaattttcttcaacttctaattataaaatactctaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31073274 |
aaacaaaatatgaatcttttatttactgcaactttagcataaacttgtaacgagtatcagttcaaattttcttaaacttctaattataaaatactctaaa |
31073373 |
T |
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| Q |
201 |
accttgtgttacttgatcagag--taaaaatttggatggtgaatagtgttttcaaagggttttcctgtt |
267 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31073374 |
accttgtgttacttgatcagagtctaaaaatttggatggtgaatagtgttttcaaagggttttcctgtt |
31073442 |
T |
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