View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_78 (Length: 286)
Name: NF16077_low_78
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 54183802 - 54183541
Alignment:
| Q |
10 |
gcagagacttgaggtggctgaattcagtggactaaaatcaacttcatgcattacctatgccagtaatgctagagagtcttctttttctgatgttgtagct |
109 |
Q |
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| T |
54183802 |
gcagagacttgaggtggctgaattcagtggactaaaatcaacttcatgcattacctatgccagtaatgctagagagtcttctttttctgatgttgtagct |
54183703 |
T |
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| Q |
110 |
gttcaactcgcaaccaaggttattttctagttacatgttttatatatctcattggatcatgagcaattccttccttcttttatatgtcacatagatgtat |
209 |
Q |
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| T |
54183702 |
gctcaactcgcaaccaaggttattttctagttacatgttttatatatctcattggatcatgagcaattccttccttcttttatatgtcacatagatgtat |
54183603 |
T |
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| Q |
210 |
tagctccgatgaagcactgacacaaacaccaaatactacactgaattgtcgacaatggtaat |
271 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54183602 |
tagctcctatgaagcactgacacaaacaccaaatactacactgaattgtcgacaatggtaat |
54183541 |
T |
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