View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_85 (Length: 274)

Name: NF16077_low_85
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_85
NF16077_low_85
[»] chr6 (5 HSPs)
chr6 (15-258)||(12956596-12956839)
chr6 (15-258)||(12930794-12931037)
chr6 (22-256)||(12947161-12947395)
chr6 (40-254)||(12905709-12905923)
chr6 (40-253)||(12898088-12898302)
[»] chr2 (1 HSPs)
chr2 (15-258)||(17924854-17925097)
[»] chr5 (11 HSPs)
chr5 (42-253)||(10764610-10764818)
chr5 (40-256)||(10563547-10563760)
chr5 (15-253)||(10610233-10610468)
chr5 (50-253)||(10742185-10742388)
chr5 (40-253)||(10748491-10748701)
chr5 (130-252)||(10653765-10653887)
chr5 (97-174)||(10718431-10718508)
chr5 (202-253)||(7191528-7191579)
chr5 (208-254)||(10599610-10599656)
chr5 (203-253)||(10661721-10661771)
chr5 (130-174)||(7191604-7191648)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 12956839 - 12956596
Alignment:
Q  15 tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 114  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12956839 tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 12956740  T
Q  115 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 214  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  12956739 caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagca 12956640  T
Q  215 tttgcaatcgaaatagggattggacctgagaattgatttgctgc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12956639 tttgcaatcgaaatagggattggacctgagaattgatttgctgc 12956596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 12931037 - 12930794
Alignment:
Q  15 tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 114  Q
    |||||| ||||||||||||   || ||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||   ||     
T  12931037 tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc 12930938  T
Q  115 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 214  Q
    |||| ||||   |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12930937 caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagca 12930838  T
Q  215 tttgcaatcgaaatagggattggacctgagaattgatttgctgc 258  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  12930837 tttgcaatcgaagtagggattggacctgagaattgatttgctgc 12930794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 12947395 - 12947161
Alignment:
Q  22 agatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaattt 121  Q
    ||||||||||||  ||| ||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||  ||| |||| ||    
T  12947395 agatatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaactt 12947296  T
Q  122 agattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaa 221  Q
    ||   |||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  12947295 aggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaa 12947196  T
Q  222 tcgaaatagggattggacctgagaattgatttgct 256  Q
    | |||||||| ||||||||||||||||||||||||    
T  12947195 ttgaaataggaattggacctgagaattgatttgct 12947161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 40 - 254
Target Start/End: Complemental strand, 12905923 - 12905709
Alignment:
Q  40 tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt 139  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||  ||  |||| ||||| ||||||||| ||||    
T  12905923 tagtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgt 12905824  T
Q  140 aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac 239  Q
    |||||| |||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  12905823 aaattccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggac 12905724  T
Q  240 ctgagaattgatttg 254  Q
    | |||||||||||||    
T  12905723 cagagaattgatttg 12905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 12898302 - 12898088
Alignment:
Q  40 tagtttactgcaattagtcaaatattttagaaattctaaa-tccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttg 138  Q
    ||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||  ||  |||| ||||| ||||||||| |||    
T  12898302 tagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttg 12898203  T
Q  139 taaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattgga 238  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |  ||||||||||| |||||||| ||||||||| |||||||||||||| ||||||    
T  12898202 taaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagcaatcgaaataggaattgga 12898103  T
Q  239 cctgagaattgattt 253  Q
    || ||||||||||||    
T  12898102 ccagagaattgattt 12898088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 17924854 - 17925097
Alignment:
Q  15 tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 114  Q
    |||||| |||||||||||   ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| | | |||||||||||||  ||     
T  17924854 tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc 17924953  T
Q  115 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 214  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | |  ||||||||||| |||||||||||||||     
T  17924954 caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg 17925053  T
Q  215 tttgcaatcgaaatagggattggacctgagaattgatttgctgc 258  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  17925054 tttgcaatcgaaaaagggattggacctgagaattgatttcctgc 17925097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 253
Target Start/End: Original strand, 10764610 - 10764818
Alignment:
Q  42 gtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaa 141  Q
    |||| |||||||| ||||||||||||| ||| ||||||||||| || ||| ||| |||||||||||||  || |||||||||   |  ||||| ||||||    
T  10764610 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 10764709  T
Q  142 attcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacct 241  Q
    |||| ||||||||||||||||||||||||| ||   |||  |||||| ||||| || ||||| | ||||||||||||||||||||| |||||||| ||||    
T  10764710 attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtacct 10764806  T
Q  242 gagaattgattt 253  Q
    ||||||||||||    
T  10764807 gagaattgattt 10764818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 256
Target Start/End: Complemental strand, 10563760 - 10563547
Alignment:
Q  40 tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt 139  Q
    ||||||||| ||||| |||||||| |||| ||| |||||||| ||| ||||| ||||||||||||||||  ||   ||| ||||   | |||||||||||    
T  10563760 tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgt 10563661  T
Q  140 aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac 239  Q
    || ||| ||||||||||||||||||| |||||||    ||| |   ||||||| | ||||||||||| |||||||||| |||| ||||||||||||||||    
T  10563660 aacttctctagacttggaacttgtcccaccaaata---gttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggac 10563564  T
Q  240 ctgagaattgatttgct 256  Q
    |||||||||||||||||    
T  10563563 ctgagaattgatttgct 10563547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 10610468 - 10610233
Alignment:
Q  15 tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 114  Q
    |||||| |||||| |||||  | | ||||||||| || || ||||||||||||| ||| |||||||| ||||||||| ||||||| |||| |||  |||     
T  10610468 tattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattc 10610369  T
Q  115 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 214  Q
    |||| | ||   | |||||||| |||| ||| ||||||||||||||||||||||||||||   ||| |  ||||| || | || |||||||| |||||||    
T  10610368 caaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaaatt---gttttgacctaaatcaattatttgtagggaagaagca 10610272  T
Q  215 tttgcaatcgaaatagggattggacctgagaattgattt 253  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  10610271 tttgcaatggaaacagggattggacctgagaattgattt 10610233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 10742185 - 10742388
Alignment:
Q  50 caattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgcta 149  Q
    ||||| ||||||||| ||| |||   |||||| || | |||| |||||||||||||||| || ||||||||||   |   |||||| ||||| ||| | |    
T  10742185 caatttgtcaaatatcttaaaaacattaaatctatggctgaattgttacctaaattgttagactgcaaatttaatctttgaagatcctgtaacttcccaa 10742284  T
Q  150 gacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacctgagaattg 249  Q
    || ||||||||||||||||||||||  | |  |  ||||| || | |  ||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  10742285 gatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattggacctgtgaattg 10742384  T
Q  250 attt 253  Q
    ||||    
T  10742385 attt 10742388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 253
Target Start/End: Original strand, 10748491 - 10748701
Alignment:
Q  40 tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt 139  Q
    ||||||||| ||||| |||||||| |||| ||| |||||||| ||||||||| ||||||| |||| |||   || |||||||||   | |||||||||||    
T  10748491 tagtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgt 10748590  T
Q  140 aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac 239  Q
    || ||| |||||||||||||||| || |||||||    ||| |   ||||||| | || |||||||| |||||||||| |||| |||||||| |||| ||    
T  10748591 aacttctctagacttggaacttgccccaccaaat---agttttgagctaagtcaagtaattgtagggaagaagcatttacaatggaaataggcattgaac 10748687  T
Q  240 ctgagaattgattt 253  Q
    |  |||| ||||||    
T  10748688 caaagaactgattt 10748701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 10653765 - 10653887
Alignment:
Q  130 aagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcc-taagtctaatacttgtagggcagaagcatttgcaatcgaaat 228  Q
    |||||| ||||||||| | ||||||||||||||||| | |||||| || ||| |    |||||| | | ||| ||||| ||||||||||||||| |||||    
T  10653765 aagatcatgtaaattccccagacttggaacttgtccgagcaaatt-attttgatcagataagtcgagttcttttagggaagaagcatttgcaatggaaat 10653863  T
Q  229 agggattggacctgagaattgatt 252  Q
    |||||||| |||||||||||||||    
T  10653864 agggattgtacctgagaattgatt 10653887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 10718431 - 10718508
Alignment:
Q  97 acctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaatt 174  Q
    ||||||||||||||||||||||||||||     ||||| |||||| | | ||| ||||||||||||||||||||||||    
T  10718431 acctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaatt 10718508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 7191579 - 7191528
Alignment:
Q  202 tagggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt 253  Q
    ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  7191579 tagggaagaagcatttgaaatggaaatagggattgtacctgagaattgattt 7191528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 10599656 - 10599610
Alignment:
Q  208 agaagcatttgcaatcgaaatagggattggacctgagaattgatttg 254  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  10599656 agaagcatttgaaattgaagtagggattggacctgagaatttatttg 10599610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 10661721 - 10661771
Alignment:
Q  203 agggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt 253  Q
    |||| ||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  10661721 agggaagaagcatttgcaatggaaatagggattgtacctgaaaattcattt 10661771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 7191648 - 7191604
Alignment:
Q  130 aagatcttgtaaattcgctagacttggaacttgtccaaccaaatt 174  Q
    |||||| ||||| ||| ||||||||||||||||||| ||||||||    
T  7191648 aagatcatgtaacttccctagacttggaacttgtccgaccaaatt 7191604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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