View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_87 (Length: 269)

Name: NF16077_low_87
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_87
NF16077_low_87
[»] chr6 (20 HSPs)
chr6 (14-247)||(28142653-28142886)
chr6 (44-158)||(2170590-2170704)
chr6 (48-137)||(2187926-2188015)
chr6 (43-144)||(28246412-28246513)
chr6 (35-103)||(26805546-26805614)
chr6 (35-103)||(27715568-27715636)
chr6 (44-144)||(28239435-28239535)
chr6 (45-117)||(28789400-28789472)
chr6 (37-100)||(25548000-25548063)
chr6 (44-131)||(28152278-28152365)
chr6 (35-117)||(26851552-26851634)
chr6 (45-103)||(26887826-26887884)
chr6 (45-103)||(27681991-27682049)
chr6 (44-117)||(26659008-26659081)
chr6 (44-117)||(26764979-26765052)
chr6 (35-116)||(26876584-26876665)
chr6 (43-120)||(28525282-28525359)
chr6 (45-117)||(26952639-26952711)
chr6 (35-103)||(27590197-27590265)
chr6 (43-103)||(29829098-29829158)
[»] scaffold0286 (1 HSPs)
scaffold0286 (44-158)||(12557-12671)
[»] scaffold0038 (2 HSPs)
scaffold0038 (43-144)||(46574-46675)
scaffold0038 (44-144)||(39597-39697)
[»] scaffold0019 (1 HSPs)
scaffold0019 (43-144)||(55255-55356)
[»] chr1 (1 HSPs)
chr1 (35-117)||(265379-265461)
[»] scaffold0349 (1 HSPs)
scaffold0349 (35-103)||(16309-16377)
[»] chr4 (4 HSPs)
chr4 (44-117)||(18652573-18652646)
chr4 (44-117)||(18676655-18676728)
chr4 (44-117)||(18686698-18686771)
chr4 (44-117)||(18721169-18721242)
[»] chr2 (1 HSPs)
chr2 (38-103)||(17990204-17990269)
[»] scaffold0419 (1 HSPs)
scaffold0419 (45-117)||(10550-10622)
[»] scaffold0277 (2 HSPs)
scaffold0277 (45-117)||(1761-1833)
scaffold0277 (45-117)||(10727-10799)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 28142653 - 28142886
Alignment:
Q  14 agcacagattttcgttgggcaggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142653 agcacagattttcgttgggcaggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcc 28142752  T
Q  114 cttccatggctatcttctttgctactaaatccataaataacaagctccctgacagtcactttctttcgttgagagtcaatggcgttgcatgggctcttga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28142753 cttccatggctatcttctttgctactaaatccataaataacaagctccctgacagtcactttctttcgttaagagtcaatggcgttgcatgggctcttga 28142852  T
Q  214 tcatcgatggaacagaacaaataaatatcatcct 247  Q
    ||||||||||||||||||||||||||||||||||    
T  28142853 tcatcgatggaacagaacaaataaatatcatcct 28142886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 2170704 - 2170590
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 143  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||    
T  2170704 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaat 2170605  T
Q  144 ccataaataacaagc 158  Q
    | ||  |||||||||    
T  2170604 caatggataacaagc 2170590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 2187926 - 2188015
Alignment:
Q  48 ttccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgcta 137  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||  | |||||||||||| ||| ||||| ||||||    
T  2187926 ttccagagtggtttgatcaccaaagcgagggaccatcaatttctttttggtttcgtggcaggttcccttccatagctctcttcgttgcta 2188015  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 28246412 - 28246513
Alignment:
Q  43 aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa 142  Q
    |||||||||||| |||||||| |||||||||| |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||    
T  28246412 aaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaa 28246511  T
Q  143 tc 144  Q
    ||    
T  28246512 tc 28246513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 26805546 - 26805614
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    ||||||||  |||| ||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  26805546 ggaacagaggggataccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgt 26805614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 27715636 - 27715568
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    ||||||||  |||| ||||| ||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  27715636 ggaacagatgggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 27715568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 28239435 - 28239535
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 143  Q
    |||||||||||||||||||| || |||| || |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| |||||||||    
T  28239435 aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaat 28239534  T
Q  144 c 144  Q
    |    
T  28239535 c 28239535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 28789400 - 28789472
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  28789400 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 28789472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 25548000 - 25548063
Alignment:
Q  37 aacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggttt 100  Q
    ||||||||||||||| || ||||||||||||||||||| ||||    ||||| |||||||||||    
T  25548000 aacagaaaggattcctgattggtttgagcaccaaagcaggggagagacaatttctttctggttt 25548063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 28152278 - 28152365
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttct 131  Q
    ||||||||||||| |||| ||||||| |||| | ||| | ||||| |||||||||||| | | ||| |||||||||| ||| ||||||    
T  28152278 aggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttct 28152365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 26851552 - 26851634
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||||||| |||||||||| ||||| ||||||||||||| || |    ||||| | |||||||||||| ||||| |||||||    
T  26851552 ggaacagaagggattccagattggttcgagcaccaaagcagggaaaacacaatttccttctggtttcgtaaaaagatcccttc 26851634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 26887826 - 26887884
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    |||||||||| ||||||||||||||||||| |||||   || || ||||||||||||||    
T  26887826 ggattccagattggtttgagcaccaaagcaggggacacacactttctttctggtttcgt 26887884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 27681991 - 27682049
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    |||| ||||| ||||||||||||||||||| ||||||   |||| ||||||||||||||    
T  27681991 ggataccagattggtttgagcaccaaagcaggggacccataatttctttctggtttcgt 27682049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 26659008 - 26659081
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||| ||||| ||||| |||||||||| || ||||| | || || |||||||||||||| ||||| |||||||    
T  26659008 aggatcccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttc 26659081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 26764979 - 26765052
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||| ||||| ||||| |||||||||| || ||||| | || || |||||||||||||| ||||| |||||||    
T  26764979 aggatcccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttc 26765052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 26876584 - 26876665
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttccctt 116  Q
    ||||||||  |||||||||| |||||  | ||||||| || ||||| | ||||| |||||||||||||| ||||| ||||||    
T  26876584 ggaacagaggggattccagactggttccaacaccaaatcacgggacaaacaatttctttctggtttcgtaaaaagatccctt 26876665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 28525282 - 28525359
Alignment:
Q  43 aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccat 120  Q
    ||||||||||||||||||||| ||||||| || |||||   ||||| |||| ||||||||| | ||  ||||||||||    
T  28525282 aaggattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgtaacaacctcccttccat 28525359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 26952639 - 26952711
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    |||||||||| |||||||||||||||| || ||||    ||||| ||||||||||||||  |||| |||||||    
T  26952639 ggattccagattggtttgagcaccaaaccaggggagacacaatttctttctggtttcgtagaaagatcccttc 26952711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 27590265 - 27590197
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    ||||||||  |||| ||||| ||||||||||||||||||| ||||    ||||| ||||||||||||||    
T  27590265 ggaacagaggggataccagattggtttgagcaccaaagcaggggagacacaatttctttctggtttcgt 27590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 29829098 - 29829158
Alignment:
Q  43 aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    |||| ||||||||||||||||||||||||  | ||| ||||||||  |||| |||||||||    
T  29829098 aaggtttccagagtggtttgagcaccaaaatagggggccatcaatatctttttggtttcgt 29829158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 12557 - 12671
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 143  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||    
T  12557 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaat 12656  T
Q  144 ccataaataacaagc 158  Q
    | ||  |||||||||    
T  12657 caatggataacaagc 12671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 46574 - 46675
Alignment:
Q  43 aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa 142  Q
    |||||||||||| |||||||| |||||||||| |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||    
T  46574 aaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaa 46673  T
Q  143 tc 144  Q
    ||    
T  46674 tc 46675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 39597 - 39697
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 143  Q
    |||||||||||||||||||| || |||| || |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| |||||||||    
T  39597 aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaat 39696  T
Q  144 c 144  Q
    |    
T  39697 c 39697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 55356 - 55255
Alignment:
Q  43 aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa 142  Q
    ||||||||||||||||||||||||||||| || |||||   | ||| |||| ||||||||| | ||| ||||||||| |||| |||| ||| ||||||||    
T  55356 aaggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctttttttctactaaa 55257  T
Q  143 tc 144  Q
    ||    
T  55256 tc 55255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 265461 - 265379
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||||||  |||| ||||| ||||||||||||||||||||||||    ||||| |||||||||||||| ||||| |||||||    
T  265461 ggaacagaggggataccagattggtttgagcaccaaagcaagggaaacacaatttctttctggtttcgtaaaaagatcccttc 265379  T

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Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 16309 - 16377
Alignment:
Q  35 ggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    ||||||||  |||| ||||| ||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  16309 ggaacagatgggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 16377  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 18652646 - 18652573
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||||||||| ||||| ||||| ||||||| ||| | ||||||| |||||||||| ||| ||||| |||||||    
T  18652646 aggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttc 18652573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 18676728 - 18676655
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||||||||| ||||| ||||| ||||||| ||| | ||||||| |||||||||| ||| ||||| |||||||    
T  18676728 aggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttc 18676655  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 18686771 - 18686698
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||||||||| ||||| ||||| ||||||| ||| | ||||||| ||||||||||  || ||||| |||||||    
T  18686771 aggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttctgtaaaaagatcccttc 18686698  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 18721242 - 18721169
Alignment:
Q  44 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    ||||||||||| ||||| ||||||||||||| ||| |  |||||| ||||||||||  || ||||| |||||||    
T  18721242 aggattccagattggttcgagcaccaaagcaggggtcattcaatttctttctggttctgtaaaaagatcccttc 18721169  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 17990269 - 17990204
Alignment:
Q  38 acagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 103  Q
    |||||| |||||||||| ||||||||||||||||||| ||| |   ||||| ||||||||||||||    
T  17990269 acagaagggattccagattggtttgagcaccaaagcagggggcacacaatttctttctggtttcgt 17990204  T

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Target: scaffold0419 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 10550 - 10622
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  10550 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 10622  T

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Target: scaffold0277 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 1833 - 1761
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  1833 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 1761  T

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Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 10799 - 10727
Alignment:
Q  45 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 117  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  10799 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 10727  T

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