View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_88 (Length: 264)
Name: NF16077_low_88
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 38818053 - 38817795
Alignment:
| Q |
1 |
actaatggtaacaaccactcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataatattcc |
100 |
Q |
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| T |
38818053 |
actaatggtaacaaccactcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataatattcc |
38817954 |
T |
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| Q |
101 |
cctgataaaggctaagcctagagccactttaaataaataatataagacatagaaaatgcaaggaaatgattaatttgaatctggctatcattcctctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817953 |
cctgataaaggctaagcctagagccactttaaataaataatataagacatagaaaatgcaaggaaatgattaatttgaatctggctatcattcctctaaa |
38817854 |
T |
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| Q |
201 |
acgaaatgaatcttggctaaagccacggatcacgctcctcatgtctcattcttctcact |
259 |
Q |
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| T |
38817853 |
acgaaatgaatcttggctaaagccacggatcacgctcctcatgtctcattcttctcact |
38817795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 39458845 - 39458787
Alignment:
| Q |
61 |
caacaaggaaatttcaaggtctagttcttcataatattcccctgataaaggctaagcct |
119 |
Q |
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| T |
39458845 |
caacaagcatatttcaaggtctagctcttcgcaataatcccctgataaaggctaggcct |
39458787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 12083400 - 12083323
Alignment:
| Q |
18 |
ctcaagaaattactacaaaagattcaaacaatgttcct-ttctccaacaaggaaatttcaaggtctagttcttcataa |
94 |
Q |
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| T |
12083400 |
ctcaagaaattacaacaaaagattcaaataatgttcctaatctacaacaagtatatttcaaggtctagttcttcataa |
12083323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 12083266 - 12083229
Alignment:
| Q |
222 |
gccacggatcacgctcctcatgtctcattcttctcact |
259 |
Q |
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| T |
12083266 |
gccacggatcacgctcctcaagtctcattcttcacact |
12083229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 39402676 - 39402749
Alignment:
| Q |
18 |
ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataa |
94 |
Q |
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| T |
39402676 |
ctcaagaaattacaacgaaatattcaaacagttttcctttct---acaaggacatttcaaggtgaagttcttcataa |
39402749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 20150870 - 20150795
Alignment:
| Q |
18 |
ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataata |
96 |
Q |
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||||| || |||| |||||||||| ||||||||||| || ||||||||| ||||||||||||||||| || ||||| |
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| T |
20150870 |
ctcaaaaatttacaacaaaagattgaaacaatgttc---tcgacaacaaggatatttcaaggtctagttcgtcgtaata |
20150795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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