View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_9 (Length: 605)
Name: NF16077_low_9
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 245 - 598
Target Start/End: Complemental strand, 39488616 - 39488275
Alignment:
| Q |
245 |
cgcaatgccttcagtttttaggttctgatagtgttttttcgacttgtttcaaggctgattgctgttgttctgtattaggaagttgcaggagtatgttttc |
344 |
Q |
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| T |
39488616 |
cgcaatgccttcagtttttaggttctgatagagttttttcgacttgtttcaaggctgattgctgttgttctgtattaggaatttgcaggagtatgttttc |
39488517 |
T |
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| Q |
345 |
taagacatttgctttgggatgtcaataaaatttgtcaattaatttagctattnnnnnnnntt-aaaagtatatgaagaagcaaatagaagttttattcaa |
443 |
Q |
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| T |
39488516 |
taagtcatttgctttgggatgtcaataaaatttgtcaattaatttagctattaaaaaaaattaaaaagtatatgaagaagcaaatagaagttttattcaa |
39488417 |
T |
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| Q |
444 |
tatcagtgttaactattcagattagatgacagcttttctcatttttcagccgcaccttcatgttaccagcaaaagaataacacaatcaaggcatgatgca |
543 |
Q |
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| T |
39488416 |
tatcagtgttaactattcagattatatg-------------tttttcagccgcaccttcatgttacgagcaaaataataacacaatcaaggcatgatgca |
39488330 |
T |
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| Q |
544 |
tgtacagaaacatatgtgattttcttcacagaaactaacaaaacagatattcttc |
598 |
Q |
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| T |
39488329 |
tgtacagaaacatatgtgattttcttcacagaaactaacaaaacggatattcttc |
39488275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 39488901 - 39488736
Alignment:
| Q |
17 |
actttgatggctgagactgattttaccaattacaccagannnnnnncaaatcattatctagcttcatcgggttgtcggttgggaagaagagtgaaagaag |
116 |
Q |
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| T |
39488901 |
actttgatggctgagactgattttaccaattacaccagatttttttcaaatcattatctagcttcatcgggttgtcggttgggaagaagagtgaaagaag |
39488802 |
T |
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| Q |
117 |
gttgatgttaattttttacattattatgtgggtgttatggaaagcacaaaatgactggatcttcaa |
182 |
Q |
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| T |
39488801 |
gttgatgttaattttttacattattatgtgggtgttatggaaagcacaaaatgactggatcttcaa |
39488736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 39488697 - 39488643
Alignment:
| Q |
179 |
tcaaagaaatggcatggcattggtttttagctagtctggcaaagtcgtctcttta |
233 |
Q |
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| T |
39488697 |
tcaaagagatggcatggcattggtttttagctagtctggcaaagtcgtctcttta |
39488643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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