View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_94 (Length: 260)
Name: NF16077_low_94
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 37794133 - 37793913
Alignment:
| Q |
20 |
atgcagattttctgggaagatgagaagctcctcagttctgccttcccttctgactgagtattctgcataggttttaagtttacttgttactatgtctgtc |
119 |
Q |
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| T |
37794133 |
atgcagattttctgggaagatgagaagctcctcagttctgccttcccttctgactgagtattctgcataggttttaagtttacttgttactatgtctgtc |
37794034 |
T |
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| Q |
120 |
tctttacaatgtttttagttttcttgttcatttaactttgttctctttaccaatgtttgtgagactatgttaaggcacctttgttattattattgtatca |
219 |
Q |
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| T |
37794033 |
tctttacaatgttttaagttttcttgttcatttaactttgttctcttttccaatgtttgtgagactatgttaaagcacctttgttattattattgtatca |
37793934 |
T |
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| Q |
220 |
ctgaattacttatgagtacct |
240 |
Q |
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| T |
37793933 |
ctgaattacttatgagtacct |
37793913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 2919268 - 2919195
Alignment:
| Q |
14 |
aagaatatgcagattttctgggaagatgagaagctcctcagttctgccttcccttctgactgagtattctgcat |
87 |
Q |
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| T |
2919268 |
aagaatttacagattttctttgaggatgagaagttcctcagttcttccttcccttctgactaagtattctgcat |
2919195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 28023143 - 28022953
Alignment:
| Q |
23 |
cagattttctgggaagatgagaagctcctcagttctgccttcccttctgactgagtattctgcataggttttaagtttacttgttactatgtctgtctct |
122 |
Q |
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| T |
28023143 |
cagattttctgtgaggatgagaagctcctcagttctgcattcccttcttactgagtattctgcataggttttaaatttacttgttaccatgtctgtctct |
28023044 |
T |
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| Q |
123 |
ttacaatgtttttagttttcttgttcatttaactttgttctctttaccaatgtttgtgagactatgttaaggcacctttgttattattatt |
213 |
Q |
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|||||||||||| ||||||| ||||| |||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||| |
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| T |
28023043 |
ttacaatgttttaagttttcgtgttcttttaacttggttctcttttctgtggtttgtaagactatgttaaggcacctttgttattattatt |
28022953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 1508363 - 1508395
Alignment:
| Q |
38 |
gatgagaagctcctcagttctgccttcccttct |
70 |
Q |
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| T |
1508363 |
gatgagaagttcctcagttctgccttcccttct |
1508395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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