View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_95 (Length: 259)

Name: NF16077_low_95
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_95
NF16077_low_95
[»] chr5 (11 HSPs)
chr5 (42-241)||(8488122-8488321)
chr5 (42-240)||(35014186-35014384)
chr5 (153-241)||(42289289-42289376)
chr5 (153-241)||(8006956-8007043)
chr5 (156-241)||(804227-804311)
chr5 (162-241)||(12564744-12564820)
chr5 (154-201)||(25942478-25942525)
chr5 (155-209)||(16518240-16518294)
chr5 (155-204)||(18908436-18908485)
chr5 (172-241)||(34177906-34177974)
chr5 (183-235)||(6911396-6911447)
[»] chr1 (4 HSPs)
chr1 (42-241)||(42476387-42476586)
chr1 (154-241)||(17128674-17128761)
chr1 (155-241)||(52251527-52251612)
chr1 (167-237)||(2653559-2653627)
[»] chr3 (5 HSPs)
chr3 (42-241)||(27302419-27302618)
chr3 (80-241)||(33575085-33575246)
chr3 (157-241)||(3694557-3694640)
chr3 (164-241)||(25408955-25409032)
chr3 (154-241)||(23050299-23050384)
[»] chr6 (3 HSPs)
chr6 (42-241)||(15912112-15912305)
chr6 (157-238)||(2189507-2189587)
chr6 (164-234)||(1767250-1767319)
[»] chr7 (6 HSPs)
chr7 (52-241)||(10061773-10061962)
chr7 (158-241)||(43026157-43026239)
chr7 (155-201)||(24904953-24904999)
chr7 (164-209)||(9628387-9628432)
chr7 (154-234)||(35516876-35516955)
chr7 (157-241)||(36156036-36156119)
[»] chr4 (9 HSPs)
chr4 (79-215)||(26961220-26961356)
chr4 (163-238)||(13137273-13137346)
chr4 (155-236)||(8815536-8815616)
chr4 (164-209)||(13608814-13608859)
chr4 (164-209)||(22495221-22495266)
chr4 (162-241)||(42527184-42527261)
chr4 (167-237)||(45637625-45637693)
chr4 (42-75)||(37207389-37207422)
chr4 (161-209)||(22294742-22294790)
[»] chr2 (4 HSPs)
chr2 (164-241)||(34740534-34740611)
chr2 (154-209)||(5690869-5690924)
chr2 (44-76)||(36178938-36178970)
chr2 (156-201)||(29691283-29691327)
[»] chr8 (2 HSPs)
chr8 (166-241)||(43776414-43776488)
chr8 (169-241)||(38738624-38738694)
[»] scaffold0777 (1 HSPs)
scaffold0777 (164-241)||(1075-1151)
[»] scaffold0225 (1 HSPs)
scaffold0225 (42-75)||(6577-6610)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 8488122 - 8488321
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattctcagaatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaata 141  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| |||||| |||| ||||   ||||||||||||||||    
T  8488122 atcatggttggtggctaagtccgttttctattctcggaatagggtaattgtctttatttctttttttgctgcttggtggttggtttttgccttgtaaata 8488221  T
Q  142 ttgtgacgaattctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||    
T  8488222 ttgtgacgaattctgtttgtattttggtgtttcttctttagcacaacttgtgctaggaaggccatttttgttgtggtaatatattgcattttagcctctt 8488321  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 35014186 - 35014384
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattctcagaatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaata 141  Q
    ||||||||||||||||| ||| ||||||||||||| || |||  || |||||| |||||||||  | |||| | || ||||   ||||||||||||||||    
T  35014186 atcatggttggtggctaggtctgttttctattctcggagtagactaattgtctttatttctttcttcgctgctaggtggttggcttttgccttgtaaata 35014285  T
Q  142 ttgtgacgaattctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctct 240  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  35014286 ttgtgacgaattctgtttgtattttgttgtttcttctttagcacaacttatgctaggaagaccatttttgttgtggtaatatattgcattttagtctct 35014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 42289289 - 42289376
Alignment:
Q  153 tctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||| | |||||||||||| |||||||| ||||||||||||||||| |||||||||  ||||||||||  |||||| ||||||    
T  42289289 tctgtttgtattatggtgtttcttccttagcacaccttgtgctaggaagacc-tttttgttggggtaatatattttattttaacctctt 42289376  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 8006956 - 8007043
Alignment:
Q  153 tctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||| |||||||||||||| |||||||| |||||| || ||||||| |||||| | | ||||||||||  |||||||||||||    
T  8006956 tctgtttgtattttggtgtttcttccttagcacaccttgtgttacgaagacc-tttttgatatggtaatatattttattttagcctctt 8007043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 804311 - 804227
Alignment:
Q  156 gtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||||||||||| |||| |||||||| |||||  ||||| | || |||||| ||| |||||||||| ||||||| ||||||    
T  804311 gtttgtactttggtgttacttccttagcacaccttgtattaggagggcc-tttttgatgtggtaatatatttcattttaacctctt 804227  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 12564820 - 12564744
Alignment:
Q  162 actttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||||||||| |||||||| || ||||||||||||||    |||||||  ||||||||| |||||||| |||||    
T  12564820 actttggtgtttcttccttagcacacctagtgctaggaagacc---attgttgtgttaatatatttcattttagtctctt 12564744  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 25942525 - 25942478
Alignment:
Q  154 ctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaag 201  Q
    ||||||| | ||||||||| ||||||||||||| ||||||||||||||    
T  25942525 ctgtttggattttggtgttacttctttagcacaacttgtgctaggaag 25942478  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 16518294 - 16518240
Alignment:
Q  155 tgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttt 209  Q
    |||||| | |||||||||||||| |||||||| |||||||  |||||||||||||    
T  16518294 tgtttgaattttggtgtttcttccttagcacaccttgtgcagggaagaccttttt 16518240  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 18908485 - 18908436
Alignment:
Q  155 tgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagacc 204  Q
    |||||| |||||||||||||||| |||||||| ||  |||||||||||||    
T  18908485 tgtttgaactttggtgtttcttccttagcacacctaatgctaggaagacc 18908436  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 34177906 - 34177974
Alignment:
Q  172 ttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||| |||||||| |||||||||||||| || |||| ||||| |||||||| | |||||||| |||||    
T  34177906 ttcttccttagcacaccttgtgctaggaaggcc-ttttcgttgtggtaatatacttcattttagtctctt 34177974  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 6911396 - 6911447
Alignment:
Q  183 cacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttag 235  Q
    |||| ||| ||||||||||||| |||||||||| |||||||||| ||||||||    
T  6911396 cacaccttatgctaggaagacc-tttttgttgtggtaatatattccattttag 6911447  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 42476387 - 42476586
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattctcagaatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaata 141  Q
    ||||||||||||||||||||||||||||||||||| || |||| || |||||| |||||||||  | |||| |||| | ||   ||||||||||||||||    
T  42476387 atcatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgctgcttggtgtttggcttttgccttgtaaata 42476486  T
Q  142 ttgtgacgaattctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||||| |||||||||||||||||| ||||||    
T  42476487 ttgtgaagaattctgtttgtattttggtgtttcttctttagcacaacttatgctaggaaggccatttttgttgtggtaatatattgcattttaacctctt 42476586  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 17128674 - 17128761
Alignment:
Q  154 ctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaata-tattgcattttagcctctt 241  Q
    ||||||| | |||||||||||||| ||||||||||||||||||||||||||  ||||| ||| ||||||  ||| ||||||||||||||    
T  17128674 ctgtttggattttggtgtttcttccttagcacatcttgtgctaggaagacc-cttttgatgtggtaatacaatttcattttagcctctt 17128761  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 52251527 - 52251612
Alignment:
Q  155 tgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||||  ||||||||||| |||||||  |||||||||||||| ||  ||||||||| | |||||||| ||||||||||||||    
T  52251527 tgtttgtactcaggtgtttcttccttagcactccttgtgctaggaaggcc-gttttgttgtgggaatatatttcattttagcctctt 52251612  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 2653627 - 2653559
Alignment:
Q  167 ggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcc 237  Q
    ||||||||||| |||||||| |||||||||||||| || |  ||||||| |||||||||| ||||||||||    
T  2653627 ggtgtttcttccttagcacaccttgtgctaggaaggcc-tgattgttgtggtaatatatt-cattttagcc 2653559  T

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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 27302419 - 27302618
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattctcagaatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaata 141  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| || |||||| |||||||||| | | |  |||| ||||   ||||||||||||||||    
T  27302419 atcatggttggtggctaagtctgttttctattctcggaataggctaattgtctttatttcttttttcgttccttggtggttggcttttgccttgtaaata 27302518  T
Q  142 ttgtgacgaattctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| ||||| |||| ||||||||||||||||||| |||||    
T  27302519 ttgagacgaattctgtttgtattttggtgtttcttttttagtacatcttgtgttaggaagaccatttttattgtggtaatatattgcattttagtctctt 27302618  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 33575246 - 33575085
Alignment:
Q  80 atagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaatattgtgacgaattctgtttgtactttggtgtttcttctt 179  Q
    ||||||||||||||||| |||||||||||||||||||||||||   ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  33575246 atagggtagttgtctctttttcttttcttgctgtttggaggttggtttttgccttataaatattgtgacgaattatgtttgtattttggtgttttttctt 33575147  T
Q  180 tagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||| ||||| ||| |||| || |||||||||| |||||||||||||||||| ||||||    
T  33575146 tagcacaacttgtactaagaaggccatttttgttgtggtaatatattgcattttaacctctt 33575085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 3694640 - 3694557
Alignment:
Q  157 tttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||| || ||| ||| |||||||||| ||||||||||||||    
T  3694640 tttgtattttggtgtttcttccttagcacaccttgtgctaggaagacc-ttattgatgtggtaatatatttcattttagcctctt 3694557  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 25408955 - 25409032
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||||||| |   |||| ||||||| |||||| |||||||||||||  ||||||||| |||||||| |||||    
T  25408955 tttggtgtttcttcctcgacacaccttgtgcaaggaaggccttttttgttgtgataatatatttcattttagtctctt 25409032  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 23050299 - 23050384
Alignment:
Q  154 ctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||| |||||||||||||  |||||||| ||| || ||||||| || |||||| ||| ||||||||||  |||||||||||||    
T  23050299 ctgtttgtattttggtgtttcttagttagcacaccttatgttaggaaggcc-tttttgatgtggtaatatatt-tattttagcctctt 23050384  T

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Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 42 - 241
Target Start/End: Complemental strand, 15912305 - 15912112
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattctcagaatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaata 141  Q
    ||||||||||||||||||||||||||||||||||| || |||| || |||||| |||||||||  | |||  |||| ||||   ||||||||||||||||    
T  15912305 atcatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggcttttgccttgtaaata 15912206  T
Q  142 ttgtgacgaattctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| || ||||||||       |||||||||||||||||||||    
T  15912205 ttgtgacgaattctgtttgtattttgatgtttcttctttagcacaacttgtgctaggaaggccatttttgtt------ttatattgcattttagcctctt 15912112  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 2189587 - 2189507
Alignment:
Q  157 tttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcct 238  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||| || ||| ||| |||||||||| |||||||||||    
T  2189587 tttgtattttggtgtttcttccttagcacaccttgtgctaggaagacc-ttgttgatgtggtaatatatttcattttagcct 2189507  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 1767250 - 1767319
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcatttta 234  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||| | |||||||    
T  1767250 tttggtgtttcttctttagcacatcttatgctaggaagacc-tctttgttgtggtaatataattcatttta 1767319  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 10061962 - 10061773
Alignment:
Q  52 gtggctaagtccgttttctattctcagaatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaatattgtgacgaa 151  Q
    ||||||||||||||||||||||||| || |||| || || ||| |||||||||  | ||| ||||| ||||   ||||||||||||||||||||  | ||    
T  10061962 gtggctaagtccgttttctattctcggagtaggctaattatctttatttctttcttcgctttttggtggttgacttttgccttgtaaatattgttgcaaa 10061863  T
Q  152 ttctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||||| ||||||||||||||||||||||| ||||||  | ||||||| ||||||||||  ||||||||||||||||||||||||    
T  10061862 ttctgtttgtattttggtgtttcttctttagcacaacttgtgtcaagaagaccatttttgttgtgataatatattgcattttagcctctt 10061773  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 43026239 - 43026157
Alignment:
Q  158 ttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||||||||||||| |||||||| |||||||||||||||   |||||| ||| |||||||| | ||||||||||||||    
T  43026239 ttgtactttggtgtttcttccttagcacaccttgtgctaggaaga-agtttttgatgtggtaatataattcattttagcctctt 43026157  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 24904999 - 24904953
Alignment:
Q  155 tgtttgtactttggtgtttcttctttagcacatcttgtgctaggaag 201  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  24904999 tgtttgtactttggtgtttcttccttagcacaccttgtgctaggaag 24904953  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 9628387 - 9628432
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttt 209  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  9628387 tttggtgtttcttctttagcacaacttgtgctaggaaggccttttt 9628432  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 35516876 - 35516955
Alignment:
Q  154 ctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcatttta 234  Q
    ||||||||| | |||||||||||| |||||||| ||| ||||||||||| |||||||| |||  ||||||||| |||||||    
T  35516876 ctgtttgtattctggtgtttcttccttagcacaccttatgctaggaaga-cttttttgatgtgataatatatttcatttta 35516955  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 36156119 - 36156036
Alignment:
Q  157 tttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||| |||| ||||||||  |||||||| ||||||||| ||||  ||| || | ||| |||||||||| ||||||||||||||    
T  36156119 tttgtattttgatgtttctttcttagcacaccttgtgctaagaaggtcttgtt-gatgtggtaatatatttcattttagcctctt 36156036  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 26961220 - 26961356
Alignment:
Q  79 aatagggtagttgtctctatttcttttcttgctgtttggaggttatattttgccttgtaaatattgtgacgaattctgtttgtactttggtgtttcttct 178  Q
    |||| |||| |||||| |||||||||  |||||| |||| ||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26961220 aataaggtaattgtctttatttctttctttgctgcttggtggttggtttttgccttgtaaatattgtgacgaattctgtttgtattttggtgtttcttct 26961319  T
Q  179 ttagcacatcttgtgctaggaagaccttttttgttgt 215  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  26961320 ttagcacaacttgtgctaggaagaccatttttgttgt 26961356  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 13137273 - 13137346
Alignment:
Q  163 ctttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcct 238  Q
    ||||||||||||||| |  |||||||||||||||||||||||  ||||||||| |||||||| | |||||||||||    
T  13137273 ctttggtgtttcttcctcggcacatcttgtgctaggaagacc--ttttgttgtggtaatataattcattttagcct 13137346  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 8815536 - 8815616
Alignment:
Q  155 tgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagc 236  Q
    ||||||||||| ||||||||||| |||||||  |||||||||||||| || | |||||| | |||||||||| |||||||||    
T  8815536 tgtttgtacttaggtgtttcttccttagcactccttgtgctaggaaggcc-tatttgttatggtaatatatttcattttagc 8815616  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 13608859 - 13608814
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttt 209  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  13608859 tttggtgtttcttctttagcacaacttgtgctaggaaggccttttt 13608814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 22495266 - 22495221
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttt 209  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  22495266 tttggtgtttcttctttagcacaacttgtgctaggaagaccatttt 22495221  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 42527261 - 42527184
Alignment:
Q  162 actttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||||||||| ||  |||| |||||||||||||| ||  ||||| |||||||||||| | |||||| |||||||    
T  42527261 actttggtgtttcttccttgacacaccttgtgctaggaaggcc--ttttgatgtagtaatataattcatttttgcctctt 42527184  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 45637625 - 45637693
Alignment:
Q  167 ggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcc 237  Q
    ||||||||||| |||||||| |||||||||||||| || |  ||||||| |||||||||| ||||||||||    
T  45637625 ggtgtttcttccttagcacaccttgtgctaggaaggcc-tgattgttgtggtaatatatt-cattttagcc 45637693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 37207422 - 37207389
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattct 75  Q
    |||||||||| |||||||||||||||||||||||    
T  37207422 atcatggttgatggctaagtccgttttctattct 37207389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 22294742 - 22294790
Alignment:
Q  161 tactttggtgtttcttctttagcacatcttgtgctaggaagaccttttt 209  Q
    |||||| ||| || |||||||||||| |||||||||||||| |||||||    
T  22294742 tactttagtgctttttctttagcacaccttgtgctaggaagcccttttt 22294790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 34740611 - 34740534
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||| |||||||  ||||||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||    
T  34740611 tttggtgttacttctttgacacatcttgtgctaggaaggccatttttattgtggtaatatattgcattttagtctctt 34740534  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 5690924 - 5690869
Alignment:
Q  154 ctgtttgtactttggtgtttcttctttagcacatcttgtgctaggaagaccttttt 209  Q
    ||||||| | || ||||||||||| ||||||||||||||||||||||| |||||||    
T  5690924 ctgtttgaatttgggtgtttcttccttagcacatcttgtgctaggaagtccttttt 5690869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 36178938 - 36178970
Alignment:
Q  44 catggttggtggctaagtccgttttctattctc 76  Q
    |||||||||||||||||||||||||||||||||    
T  36178938 catggttggtggctaagtccgttttctattctc 36178970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 29691283 - 29691327
Alignment:
Q  156 gtttgtactttggtgtttcttctttagcacatcttgtgctaggaag 201  Q
    |||||||||||||||||||||| || ||||| ||||||||||||||    
T  29691283 gtttgtactttggtgtttcttcctt-gcacaccttgtgctaggaag 29691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 43776414 - 43776488
Alignment:
Q  166 tggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||||||||| |||| ||| |||||||||||||| ||  ||||||||| |||||||| | ||||||||||||||    
T  43776414 tggtgtttcttccttagtacaccttgtgctaggaaggcc-attttgttgtggtaatataattcattttagcctctt 43776488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 38738624 - 38738694
Alignment:
Q  169 tgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    ||||||||| ||||||||||||||||| ||||| || | |||||||| |||||||||| ||||||| ||||||    
T  38738624 tgtttcttccttagcacatcttgtgctgggaaggcc-tgtttgttgtggtaatatatt-cattttaacctctt 38738694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 1075 - 1151
Alignment:
Q  164 tttggtgtttcttctttagcacatcttgtgctaggaagaccttttttgttgtagtaatatattgcattttagcctctt 241  Q
    |||||| ||||||| |||||||| |||||||||||||| || || |||  ||||||||||||| |||||||| |||||    
T  1075 tttggtatttcttccttagcacaccttgtgctaggaaggcc-ttgttgacgtagtaatatatttcattttagtctctt 1151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 6577 - 6610
Alignment:
Q  42 atcatggttggtggctaagtccgttttctattct 75  Q
    |||||||||||||||||||||||||| |||||||    
T  6577 atcatggttggtggctaagtccgtttgctattct 6610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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