View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16077_low_96 (Length: 255)

Name: NF16077_low_96
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16077_low_96
NF16077_low_96
[»] chr3 (11 HSPs)
chr3 (1-152)||(33218902-33219049)
chr3 (83-150)||(24162314-24162381)
chr3 (83-150)||(24163676-24163743)
chr3 (16-61)||(11226422-11226467)
chr3 (83-117)||(55201953-55201987)
chr3 (29-63)||(25548424-25548458)
chr3 (16-53)||(11236999-11237036)
chr3 (133-169)||(23706946-23706982)
chr3 (133-169)||(23725402-23725438)
chr3 (133-169)||(23743858-23743894)
chr3 (133-169)||(23773385-23773421)
[»] chr5 (9 HSPs)
chr5 (83-168)||(2312955-2313040)
chr5 (83-152)||(3969301-3969370)
chr5 (83-171)||(2313835-2313923)
chr5 (65-141)||(20848608-20848684)
chr5 (129-181)||(10143115-10143168)
chr5 (84-141)||(20855668-20855725)
chr5 (92-202)||(20847758-20847868)
chr5 (147-191)||(35855666-35855710)
chr5 (4-46)||(4267684-4267726)
[»] chr2 (3 HSPs)
chr2 (83-168)||(35112838-35112923)
chr2 (83-169)||(41432787-41432873)
chr2 (83-171)||(35113718-35113806)
[»] chr6 (3 HSPs)
chr6 (75-191)||(29299030-29299146)
chr6 (84-209)||(27786520-27786645)
chr6 (84-117)||(27785872-27785905)
[»] chr7 (3 HSPs)
chr7 (83-168)||(37034810-37034895)
chr7 (75-169)||(39323794-39323888)
chr7 (83-171)||(37035690-37035778)
[»] chr4 (6 HSPs)
chr4 (83-168)||(26341453-26341538)
chr4 (83-169)||(33959659-33959745)
chr4 (83-171)||(26342333-26342421)
chr4 (84-191)||(22405659-22405765)
chr4 (116-169)||(30610242-30610294)
chr4 (106-169)||(52305836-52305899)
[»] chr1 (2 HSPs)
chr1 (83-117)||(5763092-5763126)
chr1 (137-169)||(18543641-18543673)
[»] scaffold0983 (1 HSPs)
scaffold0983 (131-169)||(1920-1958)
[»] chr8 (1 HSPs)
chr8 (129-165)||(8826437-8826473)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 33219049 - 33218902
Alignment:
Q  1 ttctttctctacgataaatacttaaatatattattgataaaataatcattaatgttgtattgacacacatacaaatataggtcatatctagtgagaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||| ||||||||||||||||||||    
T  33219049 ttctttctctacgataaatacttaaatatattattgataaaataatcattaatgttgtattgacacacaca----tatatgtcatatctagtgagaatga 33218954  T
Q  101 gtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaata 152  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33218953 gtttgttatgtgagaatatgagaatgatttatcaaccattaaattaaaaata 33218902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 24162314 - 24162381
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaa 150  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  24162314 catatctagtgagaatgagtttgttatgtgagaatgtgagaatggtttatcaaccattagattaaaaa 24162381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 24163743 - 24163676
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaa 150  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  24163743 catatctagtgagaatgagtttgttatgtgagaatgtgagaatggtttatcaaccattagattaaaaa 24163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 11226467 - 11226422
Alignment:
Q  16 aaatacttaaatatattattgataaaataatcattaatgttgtatt 61  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  11226467 aaatacttaaatacattattgataaaataatcattaatgttttatt 11226422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 55201987 - 55201953
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaat 117  Q
    |||||||||||||||||||||||||||||||||||    
T  55201987 catatctagtgagaatgagtttgttatgtgagaat 55201953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 25548458 - 25548424
Alignment:
Q  29 tattattgataaaataatcattaatgttgtattga 63  Q
    |||||||||||||||||| ||||||||||||||||    
T  25548458 tattattgataaaataataattaatgttgtattga 25548424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 11237036 - 11236999
Alignment:
Q  16 aaatacttaaatatattattgataaaataatcattaat 53  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  11237036 aaatacttaaatgtattaatgataaaataatcattaat 11236999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 23706946 - 23706982
Alignment:
Q  133 caactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  23706946 caaccattaaataaaaaatagatggttgagattaaaa 23706982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 23725402 - 23725438
Alignment:
Q  133 caactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  23725402 caaccattaaataaaaaatagatggttgagattaaaa 23725438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 23743858 - 23743894
Alignment:
Q  133 caactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  23743858 caaccattaaataaaaaatagatggttgagattaaaa 23743894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 23773385 - 23773421
Alignment:
Q  133 caactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  23773385 caaccattaaataaaaaatagatggttgagattaaaa 23773421  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 2312955 - 2313040
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||    
T  2312955 catatctagtgagaatgagtttgttatgtgagaatatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 2313040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 3969370 - 3969301
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaata 152  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  3969370 catatctagtgagaatgggtttgttatgtgagaatatgagaatgatttatcagccattagattaaaaata 3969301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 2313923 - 2313835
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagt 171  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||   |||| ||||||||   | ||||||||||||||||    
T  2313923 catatctagtgagaatgagtttgttatgtaagaatgtgagaatgttttatcagtcattagattaaaaagtaaaggttgagattaaaagt 2313835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 20848684 - 20848608
Alignment:
Q  65 acacatacaaatataggtcatatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactatta 141  Q
    ||||||| | ||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||    
T  20848684 acacatagatatatatgacatatctagtgagaatgtgtttgttatgtaagaatgtgagaatgatttatcaaccatta 20848608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 10143168 - 10143115
Alignment:
Q  129 ttatcaactattaaattaaaaatagatggttgagatt-aaaagttctattttaa 181  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  10143168 ttatcaactattagattaaaaatagatggttgagattaaaaagttcttttttaa 10143115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 20855725 - 20855668
Alignment:
Q  84 atatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactatta 141  Q
    |||||||||||||||| |||||||| || ||||| |||||||||||||||||| ||||    
T  20855725 atatctagtgagaatgtgtttgttaagtaagaatgtgagaatgatttatcaaccatta 20855668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 20847758 - 20847868
Alignment:
Q  92 tgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagttctattttaattaacacat- 190  Q
    ||||| ||||||||||| || ||||| |||||||||||||||||| |||| |||   |||| |||||  |||||||||  || ||||||||||||||||     
T  20847758 tgagactgagtttgttacgtaagaatgtgagaatgatttatcaaccattagatt-gtaataaatggtcaagattaaaaactcaattttaattaacacata 20847856  T
Q  191 ggtctttccaca 202  Q
     |||||||||||    
T  20847857 tgtctttccaca 20847868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 35855666 - 35855710
Alignment:
Q  147 aaaatagatggttgagattaaaagttctattttaattaacacatg 191  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||    
T  35855666 aaaatatatgtttgagattaaaagttctattttaatcaacacatg 35855710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 4267726 - 4267684
Alignment:
Q  4 tttctctacgataaatacttaaatatattattgataaaataat 46  Q
    |||||||||||||||||||| |  |||||||||||||||||||    
T  4267726 tttctctacgataaatacttgaggatattattgataaaataat 4267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 35112838 - 35112923
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||    
T  35112838 catatctagtgagaatgagtttgttatgtgagaatatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 35112923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 41432873 - 41432787
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||| |||||| ||||    
T  41432873 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcagccattagattgaaaatagatggctgagatgaaaa 41432787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 35113806 - 35113718
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagt 171  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||   |||| ||||||||   | ||||||||||||||||    
T  35113806 catatctagtgagaatgagtttgttatgtaagaatgtgagaatgttttatcagtcattagattaaaaagtaaaggttgagattaaaagt 35113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 29299030 - 29299146
Alignment:
Q  75 atataggtcatatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagttct 174  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||| || ||||||| ||| || |||||||||||||     
T  29299030 atataggacatatctagtgagaatgagtttgttatgtgagaatatgagaatagtttatcaaccattagatcaaaaatatatgattcagattaaaagttcc 29299129  T
Q  175 attttaattaacacatg 191  Q
    |||||||  ||||||||    
T  29299130 attttaaccaacacatg 29299146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 27786645 - 27786520
Alignment:
Q  84 atatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagttctattttaatt 183  Q
    |||| ||||||||||||||||||||| |||||||||||||||| | ||||||| |||| ||| |||||| |||||||||||||||||||| ||||||||     
T  27786645 atatatagtgagaatgagtttgttatatgagaatatgagaatgctctatcaaccattagatt-aaaatacatggttgagattaaaagttcaattttaatc 27786547  T
Q  184 aacacatg-gtctttccacattctatc 209  Q
    |  ||||| ||||||||||| ||||||    
T  27786546 attacatgtgtctttccacactctatc 27786520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 27785872 - 27785905
Alignment:
Q  84 atatctagtgagaatgagtttgttatgtgagaat 117  Q
    |||||||||||||||||||||||||| |||||||    
T  27785872 atatctagtgagaatgagtttgttatatgagaat 27785905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 37034810 - 37034895
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaa 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||    
T  37034810 catatctagtgagaatgagtttcttatgtgagaatatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 37034895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 39323888 - 39323794
Alignment:
Q  75 atataggtcatatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaa 169  Q
    ||||||| |||||| | | ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||||||    
T  39323888 atataggacatatccaataagaatgaatttgttatgtgagaatatgagaatgatttatcagctattagattaaaaatatatggctgagattaaaa 39323794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 37035778 - 37035690
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagt 171  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||   |||| ||||||||   | ||||||||||||||||    
T  37035778 catatctagtgagaatgagtttgttatgtaagaatgtgagaatgttttatcagtcattagattaaaaagtaaaggttgagattaaaagt 37035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 26341453 - 26341538
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaa 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||    
T  26341453 catatctagtgagaatgagtttcttatgtgagaatatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 26341538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 33959659 - 33959745
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||    
T  33959659 catatccagtgagaatgaatttgttatgtgagaatatgagaatgatttatcagtcattagattaaaaatagatggctgagattaaaa 33959745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 26342421 - 26342333
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagt 171  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||   |||| ||||||||   | ||||||||||||||||    
T  26342421 catatctagtgagaatgagtttgttatgtaagaatgtgagaatgttttatcagtcattagattaaaaagtaaaggttgagattaaaagt 26342333  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 22405765 - 22405659
Alignment:
Q  84 atatctagtgagaatgagtttgttatgtgagaatatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaagttctattttaatt 183  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| ||  ||| |||||  |||||  ||||||||| ||||| | ||| |    
T  22405765 atatatagtgagaatgagtttgttatatgagaatgtgagaatgatttatcaactcttcgatt-aaaatgaatggtcaagattaaaatttctaatctaaat 22405667  T
Q  184 aacacatg 191  Q
    ||||||||    
T  22405666 aacacatg 22405659  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 30610294 - 30610242
Alignment:
Q  116 atatgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||||||||||||| ||| || |||| || ||||||||||||||||||||||||    
T  30610294 atatgagaatgatt-atccaccattagatcaaaaatagatggttgagattaaaa 30610242  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 52305836 - 52305899
Alignment:
Q  106 ttatgtgagaat-atgagaatgatttatcaactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||| ||||||| |||||||||||  |||||| |||| |||||||||| ||||||||||||||||    
T  52305836 ttatatgagaatgatgagaatgatc-atcaaccattagattaaaaataaatggttgagattaaaa 52305899  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 5763126 - 5763092
Alignment:
Q  83 catatctagtgagaatgagtttgttatgtgagaat 117  Q
    |||||||||||||||||||||||||||||||||||    
T  5763126 catatctagtgagaatgagtttgttatgtgagaat 5763092  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 18543673 - 18543641
Alignment:
Q  137 tattaaattaaaaatagatggttgagattaaaa 169  Q
    |||||||| ||||||||||||||||||||||||    
T  18543673 tattaaatcaaaaatagatggttgagattaaaa 18543641  T

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Target: scaffold0983 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 1958 - 1920
Alignment:
Q  131 atcaactattaaattaaaaatagatggttgagattaaaa 169  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  1958 atcaaccattaaattaaaaataaatggttgagattaaaa 1920  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 8826473 - 8826437
Alignment:
Q  129 ttatcaactattaaattaaaaatagatggttgagatt 165  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  8826473 ttatcaaccattaaattacaaatagatggttgagatt 8826437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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