View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16077_low_98 (Length: 254)
Name: NF16077_low_98
Description: NF16077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16077_low_98 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 47332197 - 47331997
Alignment:
| Q |
39 |
cctagcgaaaaattacattaccaactcgtccaaaacacggaaatgataaaagtatggtcttaatttaaaacattatcataatttgaatttagttttgata |
138 |
Q |
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| T |
47332197 |
cctagccaaaaattacattacctactcgtccaaaacacggaattgataaaagtatggtcttaatttaaaacattatcataatttgaatttagttttgata |
47332098 |
T |
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| Q |
139 |
acaccgtattcgctcctaatatttctacatgcatccttattgctagtatggatctcgcaatgggaatatgatatgttttaattcatgatctttgtaattg |
238 |
Q |
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| T |
47332097 |
acaccgtattcgctcctaatatttctatatgcatccttattgctagtatggatctcgcaatggaaatatgatatgttttaattcatgatctttgtaattg |
47331998 |
T |
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| Q |
239 |
t |
239 |
Q |
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| T |
47331997 |
t |
47331997 |
T |
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