View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16078_high_12 (Length: 271)
Name: NF16078_high_12
Description: NF16078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16078_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 33452744 - 33452983
Alignment:
| Q |
22 |
atatatatatacacataaaatatcagggtgaggggggattgcaacaaacggctaaggacggcttggcagaatttgaatattaatttgatttaaccacaaa |
121 |
Q |
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| T |
33452744 |
atatatatatacacataaaatatcagggtgaggggggattgcaacaaacggctatggacggcttggcagaatttgaatattaatttgatttaaccacaaa |
33452843 |
T |
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| Q |
122 |
tataatattgtatgcagacttgataagaaataacgtacatagtattgtaatagaaaataatgttgaggtaaggtaatagatccaatgcatgcaatagtca |
221 |
Q |
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| T |
33452844 |
tataatattgcatgcagacttgataagaaataacgtacgtagtattgtaatagaaaataatgttgaggtaaggtaatagatccaatgcatgcaatagtca |
33452943 |
T |
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| Q |
222 |
tgaggcttgaccccttctcctgttctaatatgttcctatg |
261 |
Q |
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| T |
33452944 |
tgaggcttgaccccttctcctgttctaatatgttcatatg |
33452983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 33442491 - 33442571
Alignment:
| Q |
25 |
tatatatacacataaaatatcagggtgaggggggattgcaacaaacggctaaggacggcttggcagaatttgaatattaattt |
107 |
Q |
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| T |
33442491 |
tatatatacacatataatttcagggcaagggg--attgtcacaaacggctaaggacggcttggcagaatttgaatattaattt |
33442571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 33442587 - 33442727
Alignment:
| Q |
89 |
agaatttgaatattaatttgatttaaccacaaa-tataatattgtatgcagact-tgataagaaataacgtacatagtattgtaatagaaaataatgttg |
186 |
Q |
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| T |
33442587 |
agaatttgaatattaatttgatttaactacaaattataatatcgtatttagactaagataagaaataacg----taatattgtaattggaaataatgttg |
33442682 |
T |
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| Q |
187 |
aggtaaggtaatagatccaatgcatgcaatagtcatgaggcttga |
231 |
Q |
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| T |
33442683 |
aggtacggtaatagtttcaatttttgcaatagccatgaagcttga |
33442727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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