View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16078_high_3 (Length: 736)
Name: NF16078_high_3
Description: NF16078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16078_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 17 - 731
Target Start/End: Complemental strand, 43955150 - 43954451
Alignment:
| Q |
17 |
aaaatgctctaggcttattggtcttacaagtatgctaagacaaacaagaacacactcatctgttttctcaaaatttcccaattaccttatccaaacacac |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
43955150 |
aaaatgttctaggcttattggtcttacaagtatgctaagacaaacaaaaacacactcatctgtttcctcaaaatttcccaattacctcatccaaacacac |
43955051 |
T |
|
| Q |
117 |
tctactaaatgtatgggagactccacatcatgatttatgtcaaccaatgaaataaaaagtgataaacaatgtttgttagagagtaagttggcagtgcact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43955050 |
tctactaaatgtatgggagactccacatcatgatttatgtcaaccaatgaaataaaaagtgataaacaatgtttgttagagagtaagttggcagtgcact |
43954951 |
T |
|
| Q |
217 |
catcttaatcttaatagatgtaattagtgggcgtgggcatggccatgtagtagtgctcttgtacttgacctaatgagaatcattattataaaaattaggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43954950 |
catcttaatcttaatagatgtaattagttggcgtgggcatggccatgtagtagtgctcttgtacttgacctaatgagaatcattattataaaaattaggt |
43954851 |
T |
|
| Q |
317 |
gcagcagattaatgttctgtataacatcaatctaaattcagtattactactagcgcttaaatattgattatggtactagtagcaccgactttgtttttga |
416 |
Q |
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|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
43954850 |
gcagcagattaatgttctgtaaaccatcaatctaaattcagtattactactagcgcttaaatattgattatggtactagtagcaccaactttgtttttga |
43954751 |
T |
|
| Q |
417 |
aggacacttgttgatgttaaccattttgatcctgggttggctactcaaaagattcagatgaccccttcggtagaattattcatataagtcctggcattgg |
516 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
43954750 |
aggacacttgttgatgttagccattttgatcctgggttggctactcaaaagattcagatgaccccttcagtagaattattcatataagtcctggcattga |
43954651 |
T |
|
| Q |
517 |
tagatttgttgccaagagttacaccccaaggtatatctttctactttcttctttctactttgtcctctggtaatctaatagaggactacagctaatttct |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43954650 |
tagatttgttgccaagagttacaccccaaggtatatctttcta--------------ctttgtcctctggtaatctaatagaggactacagctaatttct |
43954565 |
T |
|
| Q |
617 |
gtttgttacagacagttgctcaaagtattacctggtactccagtaattgaaatttatgtggtnnnnnnntgctgattatacatatcaaatgcaggtaata |
716 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43954564 |
gtttgttacagacagttgctcaaagtattacctggtactccagtatttgaaatttatgtggt-aaaaaatgctgattatacatatcaaatgcaggtaata |
43954466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 46242655 - 46242621
Alignment:
| Q |
86 |
aaaatttcccaattaccttatccaaacacactcta |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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|
| T |
46242655 |
aaaatttcccaattacctcatccaaacacactcta |
46242621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 564
Target Start/End: Complemental strand, 35151849 - 35151733
Alignment:
| Q |
449 |
tgggttggctactcaaaagattcagatgaccccttcggtagaattattcatataagtcctggcattggtagatttgttgccaagagttacaccccaaggt |
548 |
Q |
| |
|
||||| || ||||||||| ||||||| ||||| || |||||||| || | ||| |||||||| || || || || |||| ||||||||||| ||||||| |
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| T |
35151849 |
tgggtagggtactcaaaaaattcagaggacccttttggtagaataatacgtattagtcctggtatgggcaggttcgttggcaagagttacagtccaaggt |
35151750 |
T |
|
| Q |
549 |
at-atctttctactttc |
564 |
Q |
| |
|
|| ||||||||| |||| |
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|
| T |
35151749 |
atgatctttctagtttc |
35151733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 21307144 - 21307105
Alignment:
| Q |
86 |
aaaatttcccaattaccttatccaaacacactctactaaa |
125 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
21307144 |
aaaatttcccaattacctcatccaaacacactctattaaa |
21307105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 7977067 - 7977101
Alignment:
| Q |
86 |
aaaatttcccaattaccttatccaaacacactcta |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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|
| T |
7977067 |
aaaatttcccaattacctcatccaaacacactcta |
7977101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 44890112 - 44890147
Alignment:
| Q |
84 |
tcaaaatttcccaattaccttatccaaacacactct |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
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|
| T |
44890112 |
tcaaaatttctcaattaccttatccaaacacactct |
44890147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 13390995 - 13390962
Alignment:
| Q |
86 |
aaaatttcccaattaccttatccaaacacactct |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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|
| T |
13390995 |
aaaatttcccaattacctcatccaaacacactct |
13390962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 8735998 - 8735965
Alignment:
| Q |
86 |
aaaatttcccaattaccttatccaaacacactct |
119 |
Q |
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|
|||||||||||||||||| ||||||||||||||| |
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|
| T |
8735998 |
aaaatttcccaattacctcatccaaacacactct |
8735965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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