View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16078_low_14 (Length: 243)
Name: NF16078_low_14
Description: NF16078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16078_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 34701974 - 34701756
Alignment:
| Q |
17 |
cttctctagtttcaaaaaatacataacctcccctcaacttaaccctgttaaccatttgttaagttgagaaaaaacttatcaaaatagcgatactatgaat |
116 |
Q |
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| T |
34701974 |
cttctctagtttcaaaaaatacataacctcccctcaacttaaccctgttaaccatttgttaagttgagaaaaaacttatcaaaatagcgatactatgaat |
34701875 |
T |
|
| Q |
117 |
taccaattaagcaggtacaaccaattaattttaacaacatcaatctaaattctttagcgaatggatacatgcagttttgcggtggcagtgtgttcatgta |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34701874 |
taccaattaagcatgtacaaccaattaattttaacaacatcaatctaaattctttagcgaatggatacatgcagttttgcggtggcagtgtgttcatgta |
34701775 |
T |
|
| Q |
217 |
gataaatttatgttccttt |
235 |
Q |
| |
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||||||||||||||||||| |
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| T |
34701774 |
gataaatttatgttccttt |
34701756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 2864033 - 2864249
Alignment:
| Q |
20 |
ctctagtttcaaaaaatacataacctcccctcaacttaaccctgttaaccatttgttaagttgagaaaaaacttatcaaaatagcgatactatgaattac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2864033 |
ctctagtttcaaaaaatacataacctcccctcaacttaaccctgttaaccatctgttaagttgagaaaaaacttatcaaaatagcgatactaagaattac |
2864132 |
T |
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| Q |
120 |
caattaagcaggtacaaccaattaattttaacaaca-tcaatctaaattctttagcgaatggatacatgcagttttgcggtggcagtgtgttcatgtaga |
218 |
Q |
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||||||||| ||||| ||| ||||||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2864133 |
caattaagcctgtacagccatttaattttaacaacatttaatctaaattctttagggaatggatacaggcagttttgcggtggcagtgtgttcatgtaga |
2864232 |
T |
|
| Q |
219 |
taaatttatgttccttt |
235 |
Q |
| |
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||||||| | ||||||| |
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| T |
2864233 |
taaatttctcttccttt |
2864249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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