View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16078_low_4 (Length: 428)
Name: NF16078_low_4
Description: NF16078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16078_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 194 - 428
Target Start/End: Original strand, 9192787 - 9193027
Alignment:
| Q |
194 |
ttttttcttacttaaagctcaatatttcaaacaaactcaacaaggaatggttaatctctattttgtatgaattagctattgagatattggcttggttcac |
293 |
Q |
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| T |
9192787 |
ttttttcttacttaaagctcaatatttcaaacaaactcaacaaggaatggttaatctctattttgtatgaattagctattgagatattggcttggttcac |
9192886 |
T |
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| Q |
294 |
tcagaagaaacaaaaaataacactacttgtgaatg------ttttgattttgattttgattgagccgtgccaatatttcaaatgctatttcatgttttca |
387 |
Q |
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| T |
9192887 |
tcagaagaaacaaaaaataacactacttgtgaatgttttgattttgattttgattttgattgagccgtgccaatatttcaaatgctatttcatgttttca |
9192986 |
T |
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| Q |
388 |
ttcataggttatagtgtgatgaattgaagagaatacaaagg |
428 |
Q |
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| T |
9192987 |
ttcataggttatagtgtgatgaattgaagagaatacaaagg |
9193027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 9192620 - 9192718
Alignment:
| Q |
15 |
taatactatggattttaatgctctgtcccttctttatgccttggtagtcgagtgttttaaatgctatatacaggccctctctctttttaaacctaagaa |
113 |
Q |
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| T |
9192620 |
taatactatggattttaatgctctgtcccttctttatgccttggtagtcgagtgttttaaatgctatatacaggccctctctctttttaaacctaagaa |
9192718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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