View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16078_low_6 (Length: 387)
Name: NF16078_low_6
Description: NF16078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16078_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 49876174 - 49876479
Alignment:
| Q |
1 |
cacagaaggaaagttcaaaatttgaacaaatgaaaatctctactaatctaataatgtttgggacttccgttatcattcatatccacatccatgtatgttg |
100 |
Q |
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| T |
49876174 |
cacagaaggaaagttcaaaatttgaacaaatgaaaatctctactaatctaataatgtttgggacttccgtcatcattcatatccacatccatgtatgttg |
49876273 |
T |
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| Q |
101 |
atttatacaaactaaatacataatccaacaacttgccaacaaggaagttataagttatcattaaccaacacatttccttacgtggaaactaatattctt- |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49876274 |
atttatacaaactaaatacataatccaacaacttgccaacaaggaagttataagttatcattaaccaacacatttccttacgtggaaactaatattcttc |
49876373 |
T |
|
| Q |
200 |
caccatatatagtttattatgttagttatcgctaactacataatccaacaaattgccagcaagtaagttaagttatcattctaaaaaacaagagtaagtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49876374 |
caccatatatagtttattatgttagttatcgctaactacataatccaacaaattgccagcaagtaagttaagttatcattctaaaaaacaagagtaagtt |
49876473 |
T |
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| Q |
300 |
aagtag |
305 |
Q |
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|||||| |
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| T |
49876474 |
aagtag |
49876479 |
T |
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