View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16078_low_8 (Length: 368)
Name: NF16078_low_8
Description: NF16078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16078_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 24543099 - 24543468
Alignment:
| Q |
1 |
tatggtgtgtaggtaagcctcgagtatcaaagcctcctaaagaaaaaggcattaacaagtctttggtagtgaagttccaaactgaaaaggttaccaagaa |
100 |
Q |
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| T |
24543099 |
tatggtgtgtaggtaagcctcgagtatcaaagcctcctaaagaaaaaggcattaacaagtctttggtagtgaagttccaaactgaaaaggttaccaagaa |
24543198 |
T |
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| Q |
101 |
gagaagtggttctactaaacctaagactaaagatttatcttcttgcacaactgttccatcttcaaagaatctggaacaacctaggaagattcagaagatt |
200 |
Q |
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| T |
24543199 |
gagaagtggttctactagacctaagactaaagatttatcttcttgcacaaatgttccatcttcaaagaatctggaacaacctaggaagattcagaagatt |
24543298 |
T |
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| Q |
201 |
cagagttctttgggtggaccctcttctgataaagttggcaagggaaaggagaaagagaaccctacactttcacagaaaccacaagtttacaagaaaccag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24543299 |
cagagttctttgggtggaccctcttctgataaagttggcaagggaaaggagaaagagaaccctacactttcacagaaaccacaagtttacaagaaaccag |
24543398 |
T |
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| Q |
301 |
taaatgaaaaacccaaacaccatattcgatgggaaggtacattgta--ctcatgtattgattttttatgc |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24543399 |
taaatgaaaaacccaaacaccatattcgatgggaaggtacattgtactctcatgtattgattttttatgc |
24543468 |
T |
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