View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16079_high_2 (Length: 360)
Name: NF16079_high_2
Description: NF16079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16079_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 40938745 - 40939081
Alignment:
| Q |
17 |
ataacaaataaggtgtaattgagacaattttaaagggaataatagaaaaatatcattaataatttattggaattgtaaagtgacttaaaaatgannnnnn |
116 |
Q |
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| T |
40938745 |
ataacaaataaggtgtaattgagacaattttaaagggtataatagaaaaatatcattaataatttattggaattgtaaagtgacttaaaaatgatttttt |
40938844 |
T |
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| Q |
117 |
nnnnctaaaacaatttataattttagaaggagaataactactattttgaacaaatttaaccataacaactgaattttttcaaaatttaaatttaaatcta |
216 |
Q |
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| T |
40938845 |
ttt-ctaaaacaatttataattttagaaggagaataactacttttttaaacaaatttaaccataacaactgaattttttcaaaatttaaatttaaatcta |
40938943 |
T |
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| Q |
217 |
catcgtaatcacatattgttacaaatctaaacattttattgtcgcatgttacatgctcgtgtagcaaaagccgacacattcacattcacattcacattca |
316 |
Q |
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| T |
40938944 |
catcgtaatcacatattgttacaaatctaaacattttattgtcgcatgttacatgctcgtgtagcaaaagccga------cacatttacattcacattca |
40939037 |
T |
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| Q |
317 |
ggtggcttcgatatagcgatcatgaaaattttgcagttgctgag |
360 |
Q |
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| T |
40939038 |
ggtggcttcgatatagcgatcatgaaaattttgcagttgctgag |
40939081 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 12598328 - 12598287
Alignment:
| Q |
58 |
atagaaaaatatcattaataatttattggaattgtaaagtga |
99 |
Q |
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| T |
12598328 |
atagaaaaataacattaatattttattggtattgtaaagtga |
12598287 |
T |
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