View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16079_high_4 (Length: 339)

Name: NF16079_high_4

Description: NF16079

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16079_high_4

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 145; E-Value: 3e-76

Query Start/End: Original strand, 166 - 318

Target Start/End: Original strand, 28447982 - 28448134

Alignment:

Q	166	tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt	265	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28447982	tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt	28448081	T

Q	266	ctatttctataggcgtcaggcctacagacctcccctctacatcgatgatgatg	318	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28448082	ctatttctataggcatcagacctacagacctcccctctacatcgatgatgatg	28448134	T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 54; E-Value: 6e-22

Query Start/End: Original strand, 169 - 246

Target Start/End: Original strand, 18690607 - 18690684

Alignment:

Q	169	gggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaat	246	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	18690607	gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat	18690684	T

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