View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16079_high_5 (Length: 304)

Name: NF16079_high_5
Description: NF16079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16079_high_5
NF16079_high_5
[»] chr6 (11 HSPs)
chr6 (13-285)||(33414568-33414840)
chr6 (36-233)||(31564920-31565117)
chr6 (13-290)||(33258194-33258473)
chr6 (13-208)||(33269541-33269740)
chr6 (129-290)||(33293090-33293251)
chr6 (13-285)||(33395052-33395326)
chr6 (63-290)||(33278972-33279194)
chr6 (24-140)||(33384040-33384156)
chr6 (187-279)||(28872999-28873091)
chr6 (66-190)||(33280358-33280482)
chr6 (26-70)||(33293034-33293078)
[»] scaffold0428 (3 HSPs)
scaffold0428 (13-290)||(2315-2594)
scaffold0428 (63-290)||(15059-15281)
scaffold0428 (66-190)||(13771-13895)
[»] chr2 (1 HSPs)
chr2 (13-290)||(17447703-17447981)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 33414568 - 33414840
Alignment:
Q  13 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  113 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttgatg 212  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||  ||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcctg 33414767  T
Q  213 agatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 285  Q
    ||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  33414768 agatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcac 33414840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 233
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  36 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 135  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  136 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 233  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 33258194 - 33258473
Alignment:
Q  13 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 111  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  112 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttga 210  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 33258393  T
Q  211 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33258394 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 33258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
Q  13 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  113 tagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttt 208  Q
    ||||||||  |||  || || |||||||    |||||| |||||||| |||||||  || ||||| | || ||||| |||||||||||||||||||||||    
T  33269641 tagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 129 - 290
Target Start/End: Original strand, 33293090 - 33293251
Alignment:
Q  129 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggct 228  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| ||||||||||||||||  |||| ||||||| |  ||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  229 tttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 290  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||    
T  33293190 tttcaagatcaccttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtt 33293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 33395052 - 33395326
Alignment:
Q  13 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 110  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  111 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttga 210  Q
    || ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||| ||||||||||||||| |      
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttc 33395251  T
Q  211 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 285  Q
    | || |||| ||| | |||||||||||||||||  ||||||||    ||||||||||||||||| ||||| ||||    
T  33395252 taaggtatgattgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac 33395326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 33278972 - 33279194
Alignment:
Q  63 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 162  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  163 caactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagcttt 262  Q
     | ||    | ||||||||||||||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || ||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcatt 33279166  T
Q  263 cttacagtccatcatccctgcacaggtt 290  Q
     |||||||||||| |||| |||| ||||    
T  33279167 attacagtccatcgtcccagcaccggtt 33279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  24 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 123  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  124 tgtgtgaatcgtgaatg 140  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  187 cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc 279  Q
    |||| ||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  66 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 165  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  166 ctcgtcttccggatttcttgtcagc 190  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  26 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 70  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 2315 - 2594
Alignment:
Q  13 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 111  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  112 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttga 210  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 2514  T
Q  211 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2515 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 290
Target Start/End: Complemental strand, 15281 - 15059
Alignment:
Q  63 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 162  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  163 caactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagcttt 262  Q
     | ||    | ||||||||||||||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || ||    
T  15181 tagct----tgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcatt 15087  T
Q  263 cttacagtccatcatccctgcacaggtt 290  Q
     |||||||||||| |||| |||| ||||    
T  15086 attacagtccatcgtcccagcaccggtt 15059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  66 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 165  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  166 ctcgtcttccggatttcttgtcagc 190  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 17447981 - 17447703
Alignment:
Q  13 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 112  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  113 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-ccctttttgat 211  Q
    |||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| ||||||||  |    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttct 17447782  T
Q  212 gagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 290  Q
    ||| |||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| ||||    
T  17447781 gaggtatgcttgcgccttttcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtt 17447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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