View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1607_high_15 (Length: 231)
Name: NF1607_high_15
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_high_15 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26803221 - 26803009
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26803221 |
aagtgctgatttacccaagcctccaatcccataaattccaaccatatggaccccatcatcaggtccctcatcaagaagcgatttcacttcttgtactcga |
26803122 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|| ||||| ||||| |||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
26803121 |
gagtgcaatccaacagggtaattagcaacatgtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatc |
26803022 |
T |
|
| Q |
201 |
tattcatgtccaa |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26803021 |
tattcatgtccaa |
26803009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27427019 - 27427233
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27427019 |
aagtgttgatttacctgagcctccaatcccataaattccaaccatatggaccccatcatcaggtccctcatcaagaagcgatttcacttgttgtactcga |
27427118 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||| ||| ||||| |||||||||||||||| |||||||||| |||||||| || ||| ||||||| |
|
|
| T |
27427119 |
gactgcaatccaacagggtaagtggcaacatgtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatc |
27427218 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27427219 |
tattcatgtccaata |
27427233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 28787013 - 28786804
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| |||| |||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28787013 |
aagtgttgatttacccaagcctccagtaccataaagtcctaccatgcggactccatcatcagatccttcatcaagaagcgatttcacttgttgtactcga |
28786914 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
28786913 |
gactgcaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatc |
28786814 |
T |
|
| Q |
201 |
tattcatgtc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28786813 |
tattcatgtc |
28786804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27705811 - 27706025
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27705811 |
aagtgttgatttacccaagcctccaatgccaaaaattccaaccatatggaccccatcatcaggtccctcatcaagaagtgatttcacttgttgtactcga |
27705910 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||| || ||||| |||||||||||||||| |||||||||| |||||||| |||||| ||||||| |
|
|
| T |
27705911 |
gactgcaatccaacagggtaagtggcaacatgtaagggatgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatc |
27706010 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
27706011 |
tattcatgtgcaata |
27706025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28793134 - 28792924
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| |||| |||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28793134 |
aagtgttgatttacccaagcctccagtaccataaagtcctaccatgcggactccatcatcagatccttcatcaagaagcgatttcacttgttgtactcga |
28793035 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
28793034 |
gactgcaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatc |
28792935 |
T |
|
| Q |
201 |
tattcatgtcc |
211 |
Q |
| |
|
|||| |||||| |
|
|
| T |
28792934 |
tattaatgtcc |
28792924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27592428 - 27592642
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27592428 |
aagtgttgattttcccaagcctccaatcccataaattccaaccatatggaccccatgatcagatccttcatcaagaagcgatttcacttgttgtactcga |
27592527 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||| ||||||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||| ||||||| |
|
|
| T |
27592528 |
gactgcaatccaacagggtaagtggcaacatttaagggctgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatc |
27592627 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
27592628 |
tattcatgtgcaata |
27592642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27679725 - 27679511
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| ||||| |||||| | ||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27679725 |
aagtgttgatttccccaaacctccaatgccataaattccaaccatatggaccccatcatcggatccctcatcaagaagcgatttcacttgttgtactcga |
27679626 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||| ||||||| |
|
|
| T |
27679625 |
gactgcaatccaacagggtaagtggcaacatgtaagggctgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatc |
27679526 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
27679525 |
tattcatgtgcaata |
27679511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27717906 - 27718117
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||| ||||| ||||| |||||| ||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
27717906 |
aagtgttgatttacccaatcctccagtaccataaagtcctaccatgtggactccatcatcagatctttcatcaagaagcgatttcacttgttgtactcga |
27718005 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27718006 |
gactgcaatccaacagggtaattggcaacatgtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatc |
27718105 |
T |
|
| Q |
201 |
tattcatgtcca |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27718106 |
tattcatgtcca |
27718117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27677027 - 27677241
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| | ||| ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
27677027 |
aagtgttgattttcccaagcctccaatcccataaattccaaccatatggaccccatgatcagatccttcatcaagaagcgatttcatttgttgtactcga |
27677126 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||| || |||| |||||||||||||||| |||||||||| |||||||| |||||| ||||||| |
|
|
| T |
27677127 |
gactgcaatccaacagggtaagtggcaacatgtaagggttgttgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatc |
27677226 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
27677227 |
tattcatgtgcaata |
27677241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27610527 - 27610741
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||| ||||| ||||| |||||| ||| || |||||||||||||||||||||| ||||||| || |
|
|
| T |
27610527 |
aagtgttgatttacccaatcctccagtaccataaagtcctaccatgtggactccatcatcagatctttcatcaagaagcgatttcacttcttgtacttga |
27610626 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
27610627 |
gactgcaatccaacagggtaattggcaacatgtaagggttgacgactgatcttgttggagatgtatttgactatctctccagtaaactcgtattcatatc |
27610726 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
27610727 |
tattcatgcccaata |
27610741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27604111 - 27604325
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||| ||||| ||||| |||||| ||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
27604111 |
aagtgttgatttacccaatcctccagtaccataaagtcctaccatgtggactccatcatcagatctttcatcaagaagagatttcacttgttgtactcga |
27604210 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||| | || ||||||| |||||||| || ||| ||||||| |
|
|
| T |
27604211 |
gactgcaatccaataggataattggcaacatgtaagggctgacgactgatcttgttggagatttctttcactatctttccaataagctcgtattcatatc |
27604310 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27604311 |
tattcatgtccaata |
27604325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27697993 - 27698194
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||| ||| ||| | |||||||| ||||||||| ||||||| || |
|
|
| T |
27697993 |
aagtgttgattttcccaagcctccaatcccaaaaattccaaccatatggaccccatcatcagatccattatcaagaattgatttcactctttgtacttga |
27698092 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
27698093 |
gactgtaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatc |
27698192 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
|
|| |
|
|
| T |
27698193 |
ta |
27698194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 28781876 - 28781667
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| ||| |||| | || ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
28781876 |
aagtgttgatttacccaagcctccagtaccataaagtcctaccatcctgactccattatcatatccttcaccaagaagcgatttcacttgttgtactcgg |
28781777 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| || |||||||||||||| ||||||| |
|
|
| T |
28781776 |
gactgtaatccaacagggtaattggcaacatgtaagtgctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatc |
28781677 |
T |
|
| Q |
201 |
tattcatgtc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28781676 |
tattcatgtc |
28781667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26624046 - 26623835
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||| ||| ||| | ||||||||| |||||||||||||||| | || |
|
|
| T |
26624046 |
aagtgttgatttgcccaagcctccaatcccatacattccaaccatatggaccccatcatcagatccattatcaagaagtgatttcacttgttgtagttga |
26623947 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||| || ||||||||||||||| |||| | |||||||||||||||| |||||||||| | ||||||| | || ||||||| |
|
|
| T |
26623946 |
gactgtaatccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc |
26623847 |
T |
|
| Q |
201 |
tattcatgtcca |
212 |
Q |
| |
|
| |||||||||| |
|
|
| T |
26623846 |
tgttcatgtcca |
26623835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26730023 - 26729812
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||| ||| ||| | ||||||||| |||||||||||||||| | || |
|
|
| T |
26730023 |
aagtgttgatttgcccaagcctccaatcccatacattccaaccatatggaccccatcatcagatccattatcaagaagtgatttcacttgttgtagttga |
26729924 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||| || ||||||||||||||| |||| | |||||||||||||||| |||||||||| | ||||||| | || ||||||| |
|
|
| T |
26729923 |
gactgtaatccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc |
26729824 |
T |
|
| Q |
201 |
tattcatgtcca |
212 |
Q |
| |
|
| |||||||||| |
|
|
| T |
26729823 |
tgttcatgtcca |
26729812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27530708 - 27530922
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||| ||| ||||| |||||| ||||| ||| | ||||||||| || |||||| ||||||||||| |
|
|
| T |
27530708 |
aagtgttgatttacctatgcctccagtaccataaagtcctaccatgtggacctcatcatcagatttttcatcaagatgccctttcacatgttgtactcgg |
27530807 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| || || |||||||||| |||||||| |||||| ||| ||||||| |||| | |||||||| ||||||||||| ||| ||||||| |
|
|
| T |
27530808 |
gactgtaatccaacaggatatttggcaacatctaagggctcacgactaatcctgttggaaatgtcttcgactatctttccaataaactcgtattcatatc |
27530907 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27530908 |
tattcatgtccaata |
27530922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 31285334 - 31285126
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||||| || ||||| | | || | ||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
31285334 |
aagtgttgatttacccaagcctcctatcccataaagtcctaccatgtgtacccctttattagtttccttatcaagaagcaatttcacttgttgtattcga |
31285235 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||| |||| | |||||||||||||||| |||||||| ||||||||||| | || ||||||| |
|
|
| T |
31285234 |
aacttaaatccaacagggtaattggcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatgtctccaataaaatcatattcatatc |
31285135 |
T |
|
| Q |
201 |
tattcatgt |
209 |
Q |
| |
|
| ||||||| |
|
|
| T |
31285134 |
tgttcatgt |
31285126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26647254 - 26647044
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| ||| ||| | | | |||||||||| |||||||||||| || ||| |
|
|
| T |
26647254 |
aagtgttgatttacccaaacctccagtaccataaagtcctaccatatggaccccttcatcagattctttatcaagaagcaatttcacttgttctaatcgg |
26647155 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||| || ||||| ||||| ||||| |||||||| |||| | |||||||||||||||| | |||||||| |||||||||||||| ||||||| |
|
|
| T |
26647154 |
gactctaatccaacagggtatttggctacatgtaaaatgacacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatc |
26647055 |
T |
|
| Q |
201 |
tattcatgtcc |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
26647054 |
tattcatgtcc |
26647044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26753222 - 26753012
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| ||| ||| | | | |||||||||| |||||||||||| || ||| |
|
|
| T |
26753222 |
aagtgttgatttacccaaacctccagtaccataaagtcctaccatatggaccccttcatcagattctttatcaagaagcaatttcacttgttctaatcgg |
26753123 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||| || ||||| ||||| ||||| |||||||| |||| | |||||||||||||||| | |||||||| |||||||||||||| ||||||| |
|
|
| T |
26753122 |
gactctaatccaacagggtatttggctacatgtaaaatgacacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatc |
26753023 |
T |
|
| Q |
201 |
tattcatgtcc |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
26753022 |
tattcatgtcc |
26753012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26656740 - 26656532
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||| ||||| | ||| |||| || ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
26656740 |
aagtgttgatttacccatgcctccagtaccataaagtcctaccatgagaacctcatccttagatcccttatcaagaagcaatttcacttgttgtactcga |
26656641 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| |||| | ||||||| |||||||| |||||||| | ||||||||||||| ||||||| |
|
|
| T |
26656640 |
gactctaatccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatc |
26656541 |
T |
|
| Q |
201 |
tattcatgt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
26656540 |
tattcatgt |
26656532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26762711 - 26762503
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||| ||||| | ||| |||| || ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
26762711 |
aagtgttgatttacccatgcctccagtaccataaagtcctaccatgagaacctcatccttagatcccttatcaagaagcaatttcacttgttgtactcga |
26762612 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| |||| | ||||||| |||||||| |||||||| | ||||||||||||| ||||||| |
|
|
| T |
26762611 |
gactctaatccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatc |
26762512 |
T |
|
| Q |
201 |
tattcatgt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
26762511 |
tattcatgt |
26762503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26824594 - 26824460
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||| || |||||| | || |||| ||| |||||||||||| ||||| ||| | | | ||||||||| |||||||||||||||||||| |
|
|
| T |
26824594 |
aagtgttgatttacctaaacctccaataccgtaaagtcctaccatatggaccacatcatcagattcgttatcaagaagagatttcacttgttgtactcgg |
26824495 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaa |
135 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
26824494 |
gactgtaatccaaccgggtatttggcaacatgtaa |
26824460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27337502 - 27337635
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||| ||| ||||| | |||||| ||| ||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
27337502 |
aagtgttgattttcccaagcctctagtaccataaagtcctaccatgttgaccccttcatcagattcctcatcaagaagcaattttacttgttgtactcgg |
27337601 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgta |
134 |
Q |
| |
|
||||| || ||||| ||||| |||||||| |||| |
|
|
| T |
27337602 |
gactgtaatccaacagggtatttggcaacgtgta |
27337635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27398242 - 27398375
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||| ||| ||||| | |||||| ||| ||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
27398242 |
aagtgttgattttcccaagcctctagtaccataaagtcctaccatgttgaccccttcatcagattcctcatcaagaagcaattttacttgttgtactcgg |
27398341 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgta |
134 |
Q |
| |
|
||||| || ||||| ||||| |||||||| |||| |
|
|
| T |
27398342 |
gactgtaatccaacagggtatttggcaacgtgta |
27398375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 25492726 - 25492860
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||| ||||| |||| | |||| ||| | ||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
25492726 |
aagtgttgatttacctaagcctccagtaccataaagtcctaccatgtggaactcatcctcagatacctcatctagaagcaatttcacgtgttgtactcgg |
25492825 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaa |
135 |
Q |
| |
|
|| || || ||||| ||||| |||||||||||||| |
|
|
| T |
25492826 |
gattgtaatccaacagggtatttggcaacatgtaa |
25492860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26884845 - 26884711
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || || | ||| |||||||||| |||| | |||||||||||| |
|
|
| T |
26884845 |
aagtgttgatttacccaagcctccagtaccataaattcctaccatgtgtaccccttcgttagattccttatcaagaagcaattttaattgttgtactcgg |
26884746 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaa |
135 |
Q |
| |
|
|||| || ||||| ||||| ||||| |||||||| |
|
|
| T |
26884745 |
tactgtaatccaacagggtatttggctacatgtaa |
26884711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25539318 - 25539104
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||| |||| ||| ||| ||||||||| |||||||||||| || | | |
|
|
| T |
25539318 |
aagtgttgatttacccatgcctccagtaccataaagtcctaccatgcggacctcatcctcagagcccaagtcaagaagcaatttcacttgttctattggg |
25539219 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||| ||||| |||| ||| | || | || ||||||||||||| | |||||||| ||||||||||||| ||||||| |
|
|
| T |
25539218 |
gactgtaatccaacagggtatttggccacatataaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc |
25539119 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25539118 |
tattcatgtccaata |
25539104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25580497 - 25580283
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||| ||||| |||||| |||| ||| ||| ||||||||| |||||||||||| || ||| |
|
|
| T |
25580497 |
aagtgttgatttacccatgcctccagtaccataaagtcctaccatgtggaccacatcctcagagcccatgtcaagaagcaatttcacttgttctattcgg |
25580398 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||| ||||| || | ||| | || | || ||||||||||||| | |||||||| ||||||||||||| ||||||| |
|
|
| T |
25580397 |
gactgtaatccaacagggtatttggctacgtttaaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc |
25580298 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
25580297 |
tattcgtgtccaata |
25580283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25483834 - 25483620
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| ||| ||| ||||| ||||| |||| ||| ||| ||||||||| |||||||||||| || ||| |
|
|
| T |
25483834 |
aagtgttgatttacccatgcctccagtaccaaaaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgg |
25483735 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||| ||||| || | ||| | | || | || ||||||||||||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
25483734 |
gactgtaatccaacagggtatttggctacgtttaaaaaatcatgattgatattgttggagatgtattggactatcttctcaataaacttgtgttcatatc |
25483635 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25483634 |
tattcatgtccaata |
25483620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26143643 - 26143429
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| ||| ||| ||||| ||||| |||| ||| ||| ||||||||| ||||||||| || || ||| |
|
|
| T |
26143643 |
aagtgttgatttacccatgcctccagtaccaaaaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttcttctattcgg |
26143544 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||| ||||| |||| ||| | || | || ||||||||||||| | |||||||| ||||||||||||| ||||||| |
|
|
| T |
26143543 |
gactgtaatccaacagggtatttggctacatttaaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc |
26143444 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26143443 |
tattcatgtccaata |
26143429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26862355 - 26862230
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| ||| ||||| || ||||| ||| ||| | || |||||||||| |||||||||||| |||||| |
|
|
| T |
26862355 |
aagtgttgatttccccatgcctccagtaccataaagtcctaccatgtgtaccccttcatcagattccatatcaagaagcaatttcacttgttctactcgg |
26862256 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggc |
126 |
Q |
| |
|
|||| || ||||| ||||| ||||| |
|
|
| T |
26862255 |
gactttaatccaacagggtatttggc |
26862230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 25511565 - 25511499
Alignment:
| Q |
149 |
atcttgttggagatgttcttgactatctctccaataaacttgtactcatatctattcatgtccaata |
215 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
25511565 |
atcttgttggagatgtcttcgactatcttctcaataaacttgtattcagatctattcatgtccaata |
25511499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 60344 - 60130
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60344 |
aagtgttgatttacctgagcctccaatcccataaattccaaccatatggaccccatcatcaggtccctcatcaagaagcgatttcacttgttgtactcga |
60245 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||| ||| ||||| |||||||||||||||| |||||||||| |||||||| || ||| ||||||| |
|
|
| T |
60244 |
gactgcaatccaacagggtaagtggcaacatgtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatc |
60145 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
60144 |
tattcatgtccaata |
60130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18074536 - 18074322
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18074536 |
aagtgttgatttacctgagcctccaatcccataaattccaaccatatggaccccatcatcaggtccctcatcaagaagcgatttcacttgttgtactcga |
18074437 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||| ||| ||||| |||||||||||||||| |||||||||| |||||||| || ||| ||||||| |
|
|
| T |
18074436 |
gactgcaatccaacagggtaagtggcaacatgtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatc |
18074337 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18074336 |
tattcatgtccaata |
18074322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18698803 - 18699017
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||| ||| | ||| |||| |||||| ||| ||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
18698803 |
aagtgttgatttacccatgcctccaatgccataaagtcctaacatgcggactccatcatcagatcctttatcaagaagcgctttcacttgttgtactcga |
18698902 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
18698903 |
gactgcaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagacgtatttgactatatctccaataaacttgtattcatatc |
18699002 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18699003 |
tattcatgtccaata |
18699017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18678963 - 18679177
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||| ||||||||| ||||||| | ||||||| ||| ||||| |||| |||||| || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
18678963 |
aagtgttaatttacccatgcctccaatgccataaagtcctaccatgcggactccatcataagatcattcatcaagaagcgatttcacttgttgtactcga |
18679062 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| |||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
18679063 |
gactgcaatccaacagggtaattggcaacatgtaagggctgccgactgatcttgttagagacgtatttgactatctctccaataaacttgtattcatatc |
18679162 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18679163 |
tattcatgtccaata |
18679177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18654880 - 18655094
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||| ||||||| | ||||||| ||| | ||| |||| ||| || ||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18654880 |
aagtgttgattttcccatgcctccaataccataaagtcctatcatgcggactccaccatcagatcctttatcaagaagcgatttcacttgttgtactcga |
18654979 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
18654980 |
gactgcaacccaacagggtaactggcagcatgtaagggctgacgactgatcttgttggagacatatttgactatctttccaataaacttgtattcatatc |
18655079 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18655080 |
tattcatgtccaata |
18655094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18730907 - 18731121
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||| ||||||| | ||||||| ||| | ||| |||| ||| || || ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18730907 |
aagtgttgattttcccatgcctccaataccataaagtcctatcatgcggactccaccataagatcctttatcaagaagcgatttcacttgttgtactcga |
18731006 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||| | ||||||||||||| ||||||| |
|
|
| T |
18731007 |
gactgcaacccaacagggtaaatggcaacatgtaagggctgacgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatc |
18731106 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18731107 |
tattcatgtccaata |
18731121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18723488 - 18723702
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||| |||| ||||||| | ||||||| ||| | ||| |||| ||| || || ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18723488 |
aagtgttgattttcccatgcctccaataccataaagtcctatcatgcggactccaccattagatcctttatcaagaagcgatttcacttgttgtactcga |
18723587 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| || | |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
18723588 |
gactgcaacccaacagggtaagtggcaacatgtaagggctgacgactgatcttgttgttgacatatttgactatctttccaataaacttgtattcatatc |
18723687 |
T |
|
| Q |
201 |
tattcatgtccaata |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18723688 |
tattcatgtccaata |
18723702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4119 - 4329
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| ||| | |||| | ||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
4119 |
aagtgttgatttacccaagcctccagtaccataaagtcctaccatgtgggctccatgatcagatccttcatcaagaagcgatttcacatgttgtactcga |
4218 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4219 |
gactgtaatccaacagggtaattggcaacatgtaagggctgatgactgatcttgttggagatgttcttgactatctctccaataaacttgtattcatatc |
4318 |
T |
|
| Q |
201 |
tattcatgtcc |
211 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4319 |
tattaatgtcc |
4329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 13082 - 13291
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| |||||| ||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
13082 |
aagtgttgatttacccaagcctccagtaccataaagtcctaccatgtggactccatcatcagatccttcatcaagaagcgatttcacatgttgtactcga |
13181 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||| ||||||| |
|
|
| T |
13182 |
gactgtaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatc |
13281 |
T |
|
| Q |
201 |
tattcatgtc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
13282 |
tattcatgtc |
13291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 8262 - 8053
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| |||||| ||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
8262 |
aagtgttgatttacccaagcctccagtaccataaagtcctaccatgtggactccatcatcagatccttcatcaagaagcgatttcacatgttgtactcga |
8163 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||| ||||||| |
|
|
| T |
8162 |
gactgtaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatc |
8063 |
T |
|
| Q |
201 |
tattcatgtc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
8062 |
tattcatgtc |
8053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 267751 - 267961
Alignment:
| Q |
5 |
gttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcgagact |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||| | |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
267751 |
gttgatttacccaagcctccaatcccataaattccaaccatatggaccccatcatcagatccattatcaagaagcaatttcacttgttgtacttgagacc |
267850 |
T |
|
| Q |
105 |
gcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatctatt |
204 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
267851 |
ataatccaacagggtaattggcaacatgtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatctatt |
267950 |
T |
|
| Q |
205 |
catgtccaata |
215 |
Q |
| |
|
|||||| |||| |
|
|
| T |
267951 |
catgtcaaata |
267961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 28163782 - 28163916
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| ||||| |||||| ||||| || ||||| ||| |||||| ||||||||||||||||| || |
|
|
| T |
28163782 |
aagtgttgatttacccaagcctccagtatcataaagtcctaccatgtggacctcatcatcatatcccttatcgagaagcaatttcacttgttgtacttga |
28163881 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaa |
135 |
Q |
| |
|
|| || || ||||| || || || ||||||||||| |
|
|
| T |
28163882 |
gattgtaatccaacaggatattttgcaacatgtaa |
28163916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 28127082 - 28127217
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||| ||||| |||||| ||||| || ||||| ||| |||||| | ||||||||||||||| | |
|
|
| T |
28127082 |
aagtgttgatttacccaagcctccaataccataaagtcctaccatgtggacctcatcatcatatcccttatcgagaagcaaattcacttgttgtacttgg |
28127181 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaag |
136 |
Q |
| |
|
||| || ||||| || || ||||||||||||||| |
|
|
| T |
28127182 |
tcctgtaatccaacaggatatttggcaacatgtaag |
28127217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2946 - 3157
Alignment:
| Q |
1 |
aagtgttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||| ||||| ||||| |||||| ||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
2946 |
aagtgttgatttacccaatcctccagtaccataaagtcctaccatgtggactccatcatcagatctttcatcaagaagcgatttcacttgttgtactcga |
3045 |
T |
|
| Q |
101 |
gactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatc |
200 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
3046 |
gacttcattccaacagggtaattggcaacatgtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatc |
3145 |
T |
|
| Q |
201 |
tattcatgtcca |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3146 |
tattcatgtcca |
3157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 29273249 - 29273459
Alignment:
| Q |
5 |
gttgatttacccaagcctccagtcccataaattccgaccatatggaccccatcaacaggtccctcatcaagaagcgatttcacttgttgtactcgagact |
104 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||| ||| ||| | ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
29273249 |
gttgatttacccaagccaccaatcccataaattccaaccatatggatcccatcatcagatccattatcaagaagcgatttgacttgttgtacttgagact |
29273348 |
T |
|
| Q |
105 |
gcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgtactcatatctatt |
204 |
Q |
| |
|
| || ||||| ||||| |||||||||||||||||| || || |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
29273349 |
gtaatccaacagggtatttggcaacatgtaagggcacgcggctgatcttgttggagatgtatttgactatctctccgataaacttgtattcatatctatt |
29273448 |
T |
|
| Q |
205 |
catgtccaata |
215 |
Q |
| |
|
|||||| |||| |
|
|
| T |
29273449 |
catgtcaaata |
29273459 |
T |
|
Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 3280340 - 3280243
Alignment:
| Q |
95 |
actcgagactgcaacccaacggggtaattggcaacatgtaagggctgacgacttatcttgttggagatgttcttgactatctctccaataaacttgta |
192 |
Q |
| |
|
||||||||||||| ||||| ||||||| | |||||||||| || |||| ||||||||||||| | || |||||||| || || ||||||||||| |
|
|
| T |
3280340 |
actcgagactgcatgccaaccgggtaatcgacaacatgtaaaggagcacgatttatcttgttggatacatttttgactatatcccctataaacttgta |
3280243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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