View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1607_high_8 (Length: 255)
Name: NF1607_high_8
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42453780 - 42454018
Alignment:
| Q |
1 |
gtttgctgctacaatggagagactgcagtctcttttgagtttccaggattcaacagctacaatgttagttatgatttcgtgtctgataatagggattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453780 |
gtttgctgctacaatggagagactgcagtctcttttgagtttccaggattcaacagctacaatgttagttatgatttcgtgtctgataatagggattgtg |
42453879 |
T |
|
| Q |
101 |
gctttggctgttcctttccgatatcttgtctttgtttggtttctttattttctaaggcatccaatgttccgttcaccttttcctccattttatgaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453880 |
gctttggctgttcctttccgatatcttgtctttgtttggtttctttattttctaaggcatccaatgttccgttcaccttttcctccattttatgaaaatt |
42453979 |
T |
|
| Q |
201 |
ggattcgaaggatgccttcaaaattagatagcatgatat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453980 |
ggattcgaaggatgccttcaaaattagatagcatgatat |
42454018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University