View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1607_low_1 (Length: 548)
Name: NF1607_low_1
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 41089347 - 41089689
Alignment:
| Q |
18 |
ccttggtcgatgtaaatatctcctatgacaatctctctaagacattgaatgttgttgtatcttacccagatggtaccttttcaactattgctcaagtcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41089347 |
ccttggtcgatgtaaatatctcctatgacaatctctctaagacattgaatgttgttgtatcttacccagatggtaccttttcaactattgctcaagtcat |
41089446 |
T |
|
| Q |
118 |
tgatttgaaagaagtgcttccacacacggtgaggattggtttttctgctgccacgctaaatacgacccgtcaactacaccacctacattcatggtctttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
41089447 |
tgatttgaaagaagtgcttccacacacggtaaggattggtttttctgctgctacaacaacaggtgcccgtcaactacaccacctccatgcatggtctttc |
41089546 |
T |
|
| Q |
218 |
aaatcaaacttggacacaacaacaacgaccacctcagataatattgcaagtttttaagtcatctgatttggtttgatggatctatgcatggagcttatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41089547 |
aaatcaaacttggacacaacaacaacgaccacctcagacaatattgctagcttttaagtcatctgatttggtttgatggatctatgcatggagcttatca |
41089646 |
T |
|
| Q |
318 |
taactactatttctaaataaaataccatgctattgcttgctac |
360 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
41089647 |
taactactatttctaaataaaacaccatgctattgctagctac |
41089689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 41074247 - 41074393
Alignment:
| Q |
18 |
ccttggtcgatgtaaatatctcctatgacaatctctctaagacattgaatgttgttgtatcttacccagatggtaccttttcaactattgctcaagtcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41074247 |
ccttggtcgatgtaaatatctcctatgacagtctctctaagacattgaatgtgattgtatcttacccagatggtaccttttcaactattgctcaagtcat |
41074346 |
T |
|
| Q |
118 |
tgatttgaaagaagtgcttccacacacggtgaggattggtttttctg |
164 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
41074347 |
tgatttgaaagcagtgcttccggacacagtgaggattggtttttctg |
41074393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 410 - 538
Target Start/End: Original strand, 41089745 - 41089873
Alignment:
| Q |
410 |
ccttctaaataaagaccatgattgaacctgtgtttgagttaagggtacttcaatatttttattaatcaatttttcaattagctggatcgatggttgaaaa |
509 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41089745 |
ccttctaaataaagaccgtgattgaacctgtgtttgagttaagggtacttcaatatttttattaatcaatttttcaattagttggatcgatggttgaaaa |
41089844 |
T |
|
| Q |
510 |
ttgaactatgattgttgttacaccctatg |
538 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
41089845 |
ttgaattatgattgttgttacaccctatg |
41089873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 41074431 - 41074541
Alignment:
| Q |
184 |
ccgtcaactacaccacctacattcatggtctttcaaatcaaacttggacacaacaacaacgaccacctcagataatattgcaagtttttaagtcatctga |
283 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| |||||||||| |||||||| ||| || | |||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
41074431 |
ccgtcaactacaatacatccattcatggtctttcaagtcaaacttggccacaacaaaaacaactatctcagacaatattgcaagcttttaagtcatttga |
41074530 |
T |
|
| Q |
284 |
tttggtttgat |
294 |
Q |
| |
|
||||||||||| |
|
|
| T |
41074531 |
tttggtttgat |
41074541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University