View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607_low_10 (Length: 242)
Name: NF1607_low_10
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 29935778 - 29935579
Alignment:
| Q |
27 |
aactatcactgcagcttctcaactgcggtgatagttcagccgagacaccaccagcatggcggcggtgcttgtggaaacttgtactggcagaggatgtcaa |
126 |
Q |
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| T |
29935778 |
aactaccaccgcagcttctcaactgcggtgatagttcagccgagacaccaccagcatggcggcggtgcttgtggaaacttgtactggcagaggatgtcaa |
29935679 |
T |
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| Q |
127 |
ctttgccagagaaaaaggatcagcagacagaggagagcaaaaaagatgccaacaacaacgccgtcgtttcgagttactggggtatcagtaggcctaaggt |
226 |
Q |
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| T |
29935678 |
ctttgccagagaaaaaggatcagcagacagaggagagcaaaaaagatgccaaccacaacgccgtcgtttcgagttactggggtatcagtaggcctaaggt |
29935579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 29933094 - 29932878
Alignment:
| Q |
7 |
ctctgttccacagtagtcgcaactatcactgcagcttctcaactgcggtgatagttcagccgagacaccaccagcatggcggcggtgcttgtggaaactt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || || |||||| ||| |
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| T |
29933094 |
ctctgttccacagtagtcgcaactatcactgcagcttctcaactgcggtgatagttcagccgagac---accagaatggcggtggcactcgtggaagctt |
29932998 |
T |
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| Q |
107 |
gtactggcagaggatgtcaactttgccagagaaaaaggatcagcagacagaggagagcaaaaaagatgccaacaacaacgccgtcgtttcgagttactgg |
206 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||| ||||||||| || || | ||| |||| |||||||||||||||||||| |
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| T |
29932997 |
ctactggcagaagatgtcaactctgccagagaaaaaggatcagcattcagaggagaataagaacagtaatgacagcaacaccgtcgtttcgagttactgg |
29932898 |
T |
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| Q |
207 |
ggtatcagtaggcctaaggt |
226 |
Q |
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| T |
29932897 |
ggaatcactaggcccaaggt |
29932878 |
T |
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