View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607_low_17 (Length: 203)
Name: NF1607_low_17
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25089837 - 25090042
Alignment:
| Q |
1 |
ttatgacattcaatatctcctttgttactatttcactcccctcagtagataaatgtactccatcactaagaaataatcgaaccaccaaactaa---atta |
97 |
Q |
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| T |
25089837 |
ttatgacattcaatatctcctttgttactatttcactcccctcagttgataaatgtactccatcactaagaaataatcaaaccaccaaactaaattatta |
25089936 |
T |
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| Q |
98 |
ttgataaacaaatttgaaacattttagattaggtgcataggggcggagccattcatgtactagagtaggcatcagtccatccagccaaattacataatta |
197 |
Q |
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| T |
25089937 |
ttgataaacaaatttaaaacattttagattaggtgcataggggcggagccgttcatggactagggtgggccacggcccatccagaaaaattaaaaaatta |
25090036 |
T |
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| Q |
198 |
acaagc |
203 |
Q |
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|||||| |
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| T |
25090037 |
acaagc |
25090042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 25071154 - 25071287
Alignment:
| Q |
3 |
atgacattcaatatctcctttgttactatttcactcccctcagtagataaatgtactccatcactaagaaataatcgaaccaccaaactaaattattgat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||| ||||||| || ||||||||||| |
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| T |
25071154 |
atgacattcaatatctcctttgttactatttcactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaa |
25071253 |
T |
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| Q |
103 |
aaacaaatttgaaacattttagattaggtgcata |
136 |
Q |
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| T |
25071254 |
aaacaaatttgtaatattttagttttggtgcata |
25071287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 25062454 - 25062582
Alignment:
| Q |
6 |
acattcaatatctcctttgttactatttcactcccctcagtagataaatgtactccatcactaagaaataatcgaaccaccaaactaaattattgataaa |
105 |
Q |
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||||||||||| ||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||| ||||||| || ||||||| |||||| |
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| T |
25062454 |
acattcaatatttcctttgttactatttcactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggataaa |
25062553 |
T |
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| Q |
106 |
caaatttgaaacattttagattaggtgca |
134 |
Q |
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| T |
25062554 |
caaatttgaaacattatagtttaggtgca |
25062582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 25084061 - 25084193
Alignment:
| Q |
3 |
atgacattcaatatctcctttgttactatttcactcccctcagtagataaatgtactccatcactaagaaataatcgaaccaccaaactaaattattgat |
102 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | |||| ||| |||||||||||||||||||||| || | || || |||||||||||| |
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| T |
25084061 |
atgacattcaatatctcttttgttactatttcactccccttgtttgatagatgaactccatcactaagaaataatcaaatcccctaattaaattattgat |
25084160 |
T |
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| Q |
103 |
aaacaaatttgaaacattttagattaggtgcata |
136 |
Q |
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|||||||||||||| ||||||| ||||||||||| |
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| T |
25084161 |
aaacaaatttgaaatattttag-ttaggtgcata |
25084193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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