View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607_low_3 (Length: 444)
Name: NF1607_low_3
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 6878654 - 6879077
Alignment:
| Q |
7 |
gaagcaaaggggacggagggcgaaagagggagacgaaggaaatgacgggcactcactggccgaagggtggcgggaggcggtggaggagctaatggaatgg |
106 |
Q |
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| T |
6878654 |
gaagctaaggggacggtgggcgaaagagggagacgaaggaaatgacgggcactcactggccgaagggtggcgggaggcggtggaggagctaatggaatgg |
6878753 |
T |
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| Q |
107 |
ctgtctccggtggcgcatgacacagtccggtggcatggggaaaggcatttggagaagacaagatttgagacaaagcctacggcaatgcttctgcagacat |
206 |
Q |
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| T |
6878754 |
ctgtctccggtggcgcatgacacagtccggtggcatggggaaaggcatttggagaagacaagattcgagacaaagcctacggcaatgcttctgcagacat |
6878853 |
T |
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| Q |
207 |
tgcattactctgatttggagaaggcagagactgccatagtggaagtgttggttggtttgagttgtgtatattggtgtgagagaagattatagtgagnnnn |
306 |
Q |
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| T |
6878854 |
tgcattactctgatttggagaaggcagagactgccatagtggaagtgttggttggtttgagttgtgtatattggtgtgagagaagattatagtgagatat |
6878953 |
T |
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| Q |
307 |
nnnnnnnnnnnnnnnnnnattaggagtaattgcaaggtttcaaaaattaatttatgttgttaagtttataatgattgggctgtgattgttgcagtgtgat |
406 |
Q |
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| T |
6878954 |
attatattataatatataattaggagtaattgcaaggtttcaaaaattaatttatgttgttaagtttatgatgattgggctgt-attgttgcagtgtgat |
6879052 |
T |
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| Q |
407 |
tgatagttgaagcaatatatatatt |
431 |
Q |
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| T |
6879053 |
tgatagttgaagcaatatatctatt |
6879077 |
T |
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