View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1607_low_4 (Length: 418)

Name: NF1607_low_4
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1607_low_4
NF1607_low_4
[»] chr5 (14 HSPs)
chr5 (48-138)||(6251685-6251776)
chr5 (1-43)||(26283431-26283473)
chr5 (1-46)||(10033936-10033981)
chr5 (1-43)||(13817989-13818031)
chr5 (1-43)||(39434708-39434750)
chr5 (1-37)||(16155015-16155051)
chr5 (1-45)||(39657619-39657663)
chr5 (4-43)||(12278976-12279015)
chr5 (4-43)||(37254653-37254692)
chr5 (4-38)||(31501832-31501866)
chr5 (5-42)||(28801300-28801337)
chr5 (4-41)||(33430335-33430372)
chr5 (7-43)||(1776495-1776531)
chr5 (4-40)||(17332667-17332703)
[»] chr7 (9 HSPs)
chr7 (1-46)||(3114209-3114254)
chr7 (1-43)||(5555499-5555541)
chr7 (1-43)||(14777220-14777262)
chr7 (1-46)||(36630825-36630870)
chr7 (4-43)||(34389172-34389211)
chr7 (1-43)||(8394137-8394179)
chr7 (4-48)||(35090175-35090219)
chr7 (4-43)||(8867847-8867886)
chr7 (10-42)||(10876829-10876861)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-43)||(534-576)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-43)||(480570-480612)
[»] chr8 (8 HSPs)
chr8 (1-43)||(4404020-4404062)
chr8 (1-43)||(16788138-16788180)
chr8 (1-43)||(34136938-34136980)
chr8 (1-43)||(39914527-39914569)
chr8 (1-47)||(3648907-3648953)
chr8 (5-43)||(36408563-36408601)
chr8 (1-46)||(29728499-29728544)
chr8 (1-43)||(15838298-15838340)
[»] chr6 (3 HSPs)
chr6 (1-43)||(398629-398671)
chr6 (1-43)||(34948871-34948913)
chr6 (4-43)||(18339118-18339157)
[»] chr4 (19 HSPs)
chr4 (1-43)||(20129322-20129364)
chr4 (1-43)||(43143697-43143739)
chr4 (1-43)||(47500785-47500827)
chr4 (4-43)||(30216858-30216897)
chr4 (5-43)||(13012200-13012238)
chr4 (1-43)||(26439392-26439434)
chr4 (4-46)||(30109965-30110007)
chr4 (1-43)||(34407397-34407439)
chr4 (1-41)||(43355918-43355958)
chr4 (4-43)||(3293012-3293051)
chr4 (4-43)||(6690351-6690390)
chr4 (4-43)||(10353000-10353039)
chr4 (1-43)||(17511347-17511389)
chr4 (1-43)||(25930720-25930762)
chr4 (1-43)||(29319818-29319860)
chr4 (1-43)||(36382458-36382500)
chr4 (1-43)||(42333889-42333931)
chr4 (5-43)||(50205194-50205232)
chr4 (1-46)||(29996096-29996141)
[»] chr2 (11 HSPs)
chr2 (1-43)||(6403917-6403959)
chr2 (1-43)||(41251747-41251789)
chr2 (3-43)||(42439998-42440038)
chr2 (1-43)||(18981628-18981670)
chr2 (1-43)||(35962727-35962769)
chr2 (4-43)||(771011-771050)
chr2 (4-43)||(8147363-8147402)
chr2 (1-43)||(16405612-16405654)
chr2 (7-41)||(44084722-44084756)
chr2 (5-43)||(45418595-45418633)
chr2 (2-43)||(32127255-32127296)
[»] chr1 (4 HSPs)
chr1 (1-43)||(26144267-26144309)
chr1 (1-45)||(42311054-42311098)
chr1 (4-43)||(35907564-35907603)
chr1 (1-43)||(7433457-7433499)
[»] chr3 (11 HSPs)
chr3 (1-43)||(11018325-11018367)
chr3 (1-43)||(39771802-39771844)
chr3 (5-46)||(6931011-6931052)
chr3 (1-42)||(40081852-40081893)
chr3 (3-43)||(22968559-22968599)
chr3 (4-43)||(45182993-45183032)
chr3 (1-43)||(6269539-6269581)
chr3 (1-43)||(6503682-6503724)
chr3 (1-43)||(19390158-19390200)
chr3 (7-41)||(27935192-27935226)
chr3 (7-43)||(34084241-34084277)
[»] scaffold0154 (1 HSPs)
scaffold0154 (4-45)||(31490-31531)
[»] scaffold0502 (1 HSPs)
scaffold0502 (4-43)||(5242-5281)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-36)||(17861-17896)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 6251685 - 6251776
Alignment:
Q  48 ttagataaaagtagtgtatttt-tattttaatttaaaccttttcagggaggaaagcacgcattttctttattgaggaaagcacacatttgta 138  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6251685 ttagataaaagtagtgtattttttattttaattttaaccttttcagggaggaaagcacgcattttctttattgaggaaaccacacatttgta 6251776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26283431 - 26283473
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  26283431 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 26283473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10033981 - 10033936
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  10033981 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtcc 10033936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13818031 - 13817989
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  13818031 tgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccg 13817989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39434750 - 39434708
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  39434750 tgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccg 39434708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16155051 - 16155015
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccggg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16155051 tgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39657619 - 39657663
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtc 45  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||    
T  39657619 tgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtc 39657663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 12278976 - 12279015
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  12278976 gtctaatgtgcaaaaattatcgatcgagtccgggcgaccg 12279015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 37254692 - 37254653
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  37254692 gtctaatgtgcaaaaattatcgatcgagcctgggcgaccg 37254653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 31501832 - 31501866
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggc 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  31501832 gtctaatgtgcaaaaattatcgatcgagcccgggc 31501866  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 28801337 - 28801300
Alignment:
Q  5 tctaatgtgcaaaaattatctatcgagcccgggcgacc 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  28801337 tctaatgtgcaaaaattatcgatcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 33430372 - 33430335
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgac 41  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  33430372 gtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 1776495 - 1776531
Alignment:
Q  7 taatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  1776495 taatgtacaaaaattatcgatcgagcccgggcgaccg 1776531  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 17332667 - 17332703
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcga 40  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  17332667 gtctaatatgcaaaaattatcgatcgagcccgggcga 17332703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3114209 - 3114254
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  3114209 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtcc 3114254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5555541 - 5555499
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  5555541 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 5555499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14777220 - 14777262
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  14777220 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 14777262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36630870 - 36630825
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  36630870 tgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtcc 36630825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 34389172 - 34389211
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  34389172 gtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 34389211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8394179 - 8394137
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  8394179 tgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccg 8394137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 35090219 - 35090175
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccgtccct 48  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||    
T  35090219 gtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccct 35090175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 8867847 - 8867886
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  8867847 gtctaatatgcaaaaattatcgatcgagcccgggcgaccg 8867886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 10876829 - 10876861
Alignment:
Q  10 tgtgcaaaaattatctatcgagcccgggcgacc 42  Q
    ||||||||||||||| |||||||||||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgacc 10876861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 576 - 534
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  576 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 480570 - 480612
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  480570 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 480612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4404062 - 4404020
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  4404062 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 4404020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16788138 - 16788180
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  16788138 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 16788180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34136938 - 34136980
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  34136938 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 34136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39914569 - 39914527
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  39914569 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 39914527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3648907 - 3648953
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtccc 47  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  3648907 tgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtccc 3648953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 36408601 - 36408563
Alignment:
Q  5 tctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36408601 tctaatgtgcaaaaattatcgatcgagcccgggcgaccg 36408563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29728499 - 29728544
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||||    
T  29728499 tgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtcc 29728544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15838340 - 15838298
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||| |||||||||||||||||| |||||||||||| |||||    
T  15838340 tgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccg 15838298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 398671 - 398629
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  398671 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 398629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34948871 - 34948913
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  34948871 tgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccg 34948913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 18339157 - 18339118
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  18339157 gtctaatgtgcaaaaattattgatcgagcccgggcgaccg 18339118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20129364 - 20129322
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  20129364 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 20129322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43143697 - 43143739
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  43143697 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 43143739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47500827 - 47500785
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  47500827 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 47500785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 30216858 - 30216897
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  30216858 gtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 30216897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 13012238 - 13012200
Alignment:
Q  5 tctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  13012238 tctaatgtgcaaaaattatcgatcgagcccgggcgaccg 13012200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26439392 - 26439434
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  26439392 tgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccg 26439434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 30110007 - 30109965
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  30110007 gtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtcc 30109965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34407397 - 34407439
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  34407397 tgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccg 34407439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43355958 - 43355918
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgac 41  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  43355958 tgagtctaatgtgcaaaaattatcgaccgagcccgggcgac 43355918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 3293012 - 3293051
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  3293012 gtctaatgggcaaaaattatcgatcgagcccgggcgaccg 3293051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 6690351 - 6690390
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  6690351 gtctaatgcgcaaaaattatcgatcgagcccgggcgaccg 6690390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 10353000 - 10353039
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  10353000 gtctaatgtgcaaaaattatcgattgagcccgggcgaccg 10353039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17511347 - 17511389
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| |||||| | |||||||||    
T  17511347 tgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccg 17511389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25930762 - 25930720
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||| |||||||||||||||||  ||||||||||||||||||    
T  25930762 tgagtttaatgtgcaaaaattatagatcgagcccgggcgaccg 25930720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29319818 - 29319860
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| |||||||| || ||||||    
T  29319818 tgagtctaatgtgcaaaaattatcgatcgagcctggacgaccg 29319860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36382458 - 36382500
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||| |||||||||||||||||  ||||||||||||||||||    
T  36382458 tgagtttaatgtgcaaaaattatggatcgagcccgggcgaccg 36382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42333889 - 42333931
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  42333889 tgagtctaatgtgcaaaaattatcgattgagcccggacgaccg 42333931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 50205194 - 50205232
Alignment:
Q  5 tctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  50205194 tctaatgtgcaaaaattatcgatcgagctcgggcgaccg 50205232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29996096 - 29996141
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    |||||||||||| ||||||||||| |||||| |||| |||||||||    
T  29996096 tgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtcc 29996141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6403917 - 6403959
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  6403917 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 6403959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41251747 - 41251789
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  41251747 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 41251789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 42440038 - 42439998
Alignment:
Q  3 agtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  42440038 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 42439998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18981670 - 18981628
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  18981670 tgagtctaatgtgcaaaaattatcaatcgagcccggacgaccg 18981628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35962769 - 35962727
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  35962769 tgagtctaatgtgcaaaaattatcgatcgagcccggacgaccg 35962727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 771050 - 771011
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  771050 gtctaatgtgcaaaagttatcgatcgagcccgggcgaccg 771011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 8147402 - 8147363
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  8147402 gtctaatgtgcaaagattatcgatcgagcccgggcgaccg 8147363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16405654 - 16405612
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||| |||||||||||||| || |||||||||||||||    
T  16405654 tgagtctaacgtgcaaaaattatcgattgagcccgggcgaccg 16405612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 44084722 - 44084756
Alignment:
Q  7 taatgtgcaaaaattatctatcgagcccgggcgac 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  44084722 taatgtgcaaaaattatcgatcgagcccgggcgac 44084756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 45418633 - 45418595
Alignment:
Q  5 tctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  45418633 tctaatgcgcaaaaattatcgatcgagcccgggcgaccg 45418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 32127255 - 32127296
Alignment:
Q  2 gagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  32127255 gagtttaatgtgcaaaaattattgatcgagcccgggcgaccg 32127296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26144309 - 26144267
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  26144309 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 26144267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42311054 - 42311098
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccgtc 45  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||    
T  42311054 tgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtc 42311098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 35907603 - 35907564
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  35907603 gtctaatgtgcaaaaattatcgatcaagcccgggcgaccg 35907564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7433499 - 7433457
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||  ||||||| ||||||||||    
T  7433499 tgagtctaatgtgcaaaaattatagatcgagctcgggcgaccg 7433457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11018325 - 11018367
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  11018325 tgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccg 11018367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39771844 - 39771802
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  39771844 tgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccg 39771802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 6931011 - 6931052
Alignment:
Q  5 tctaatgtgcaaaaattatctatcgagcccgggcgaccgtcc 46  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  6931011 tctaatgcgcaaaaattatcgatcgagcccgggcgaccgtcc 6931052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40081852 - 40081893
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgacc 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  40081852 tgagtctaatgttcaaaaattatcgatcgagcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 22968559 - 22968599
Alignment:
Q  3 agtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  22968559 agtctaatgtgcaaaaattatcgatcgagcccggacgaccg 22968599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 45183032 - 45182993
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  45183032 gtctaatgcgcaaaaattatcgatcgagcccgggcgaccg 45182993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6269539 - 6269581
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| |||||| |||| ||||||    
T  6269539 tgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg 6269581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6503682 - 6503724
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||    
T  6503682 tgagtctaatttgcaaaaataatcgatcgagcccgggcgaccg 6503724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19390200 - 19390158
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  19390200 tgagtctaatgtgcaaaaattatcgatcgaacccggacgaccg 19390158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 27935226 - 27935192
Alignment:
Q  7 taatgtgcaaaaattatctatcgagcccgggcgac 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  27935226 taatgtgcaaaaattatcgatcgagcccgggcgac 27935192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 34084241 - 34084277
Alignment:
Q  7 taatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    |||||||||||||||||| |||||| |||||||||||    
T  34084241 taatgtgcaaaaattatcgatcgagtccgggcgaccg 34084277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 31531 - 31490
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccgtc 45  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  31531 gtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtc 31490  T

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Target: scaffold0502 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 5281 - 5242
Alignment:
Q  4 gtctaatgtgcaaaaattatctatcgagcccgggcgaccg 43  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  5281 gtctaatgtgcaaaaattattgatcgagcccgggcgaccg 5242  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17896 - 17861
Alignment:
Q  1 tgagtctaatgtgcaaaaattatctatcgagcccgg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  17896 tgagtctaatgtgcaaaaattatcgatcgagcccgg 17861  T

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