View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607_low_5 (Length: 325)
Name: NF1607_low_5
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 2734661 - 2734962
Alignment:
| Q |
10 |
ataatacttaagtttgttgcaagcataaagtagcgatacaaataatttctcagtggatgtatatctagtctaagcatcattcaagattcggctaagtcca |
109 |
Q |
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| T |
2734661 |
ataatacttaagtttgttgcaagcatagagtagcgatacaaataatttctcagtggatgtatatctagtctaagcatcattcaagattcgactaagtcca |
2734760 |
T |
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| Q |
110 |
ttccatcatcgatatcttgtgctagcaagaacccgattgactcatcttttgcgacaatgtacatttttaccggtttacctggtactagcggcacgagtac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2734761 |
ttccatcatcgatatcttgtgctagcaagaacccgattgactcatcttttgcgacaatgtacaactttaccggtttacctggtactagtggcacgagtac |
2734860 |
T |
|
| Q |
210 |
tggtggattcacaaaggcatacttgatttgcttaaaggtgttatgttttcggctccccatatcattccctctaagtcctttagtcttagcaatggtgaaa |
309 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2734861 |
tggtggattcacaaaggcctacttgatttgcttaatggtgttatgttttcggctccccatatcattccctctaagtcctttagtcttaacaaaggtgaaa |
2734960 |
T |
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| Q |
310 |
at |
311 |
Q |
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|| |
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| T |
2734961 |
at |
2734962 |
T |
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