View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607_low_9 (Length: 246)
Name: NF1607_low_9
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 53845842 - 53846057
Alignment:
| Q |
12 |
caaaggccaaagataatgcttacaaaaaccatggtaaaaatagttgtgagtttcagaaggtagaaaagttggaacacagcgaaacttttctaacaagact |
111 |
Q |
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| T |
53845842 |
caaaggccaaagataatgcttacaaaaaccatggtaaaaatagttgtgagtttcagaaggtagaaaagttggaacacagcgaaacttttctaacaagact |
53845941 |
T |
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| Q |
112 |
ttggcaacttcttcttgctgtgatggttcaatttcaatatgtgattttaacgaaccaacgtaaaagagttcagaatcagaggaaataccgtctttgagct |
211 |
Q |
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| T |
53845942 |
ttggcaacttcttcttgctgtgatggttcaatttcaatatgtgattttaacgaaccaacgtaaaagagttcagaatcagaggaaataccgtctttgagct |
53846041 |
T |
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| Q |
212 |
gaaaatatatgctatc |
227 |
Q |
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| T |
53846042 |
gaaaatatatgctatc |
53846057 |
T |
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