View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608-INSERTION-1 (Length: 490)
Name: NF1608-INSERTION-1
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608-INSERTION-1 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 7025542 - 7025060
Alignment:
| Q |
8 |
aactctacattctctagtgacacacaaccaccagcatctagtgtttcaatcgatggaggaagctctggtaatgtttgaagctttctgcaatggtgtaagt |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025542 |
aactctacattctctagtgacacacaaccaccagcatctagtgtttcaatcgacggaggaagctctggtaatgtttgaagctttctgcaatggtgtaagt |
7025443 |
T |
|
| Q |
108 |
ctagatgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaacttttcaagtttggtttgaagtccaat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025442 |
ctagatgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaacttttcaagtttggtttgaagtccaat |
7025343 |
T |
|
| Q |
208 |
tgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggtcactgagaattccttcagtgctgtacaattgtagagg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7025342 |
tgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggtcactgagaattccttcagtgatgtacaattgtagagg |
7025243 |
T |
|
| Q |
308 |
gagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatccactcagatccaatttcttaagctttttcagagagaaaa |
407 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7025242 |
gagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatccactcagatccagtttcttaagctttttcagagagaaaa |
7025143 |
T |
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| Q |
408 |
cagatggatggacactagtcaaccctacacagaattggaggtccattaccgcaagacttgtggcctttgaaagatctggtagc |
490 |
Q |
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| T |
7025142 |
cagatggatggacactagtcaaccctacacagaattggaggtccattactgcaagacttgtggcctttgaaagatctggtagc |
7025060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 12 - 490
Target Start/End: Original strand, 7073416 - 7073894
Alignment:
| Q |
12 |
ctacattctctagtgacacacaaccaccagcatctagtgtttcaatcgatggaggaagctctggtaatgtttgaagctttctgcaatggtgtaagtctag |
111 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||| | ||||||||||| ||||| || |
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| T |
7073416 |
ctacattctctagtgatacacaaccatcagcatctagtgtttctagtgatggaggaagctctggtagagtttgaagttcactgcaatggtgcaagtccag |
7073515 |
T |
|
| Q |
112 |
atgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaacttttcaagtttggtttgaagtccaattgat |
211 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
7073516 |
atgtctcagccttgtaagattcttgatgctttttggcaagctttcaatgtgagtgtgtcctagatataacttttcaagtttggtttgtagtccaattgat |
7073615 |
T |
|
| Q |
212 |
gagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggtcactgagaattccttcagtgctgtacaattgtagagggaga |
311 |
Q |
| |
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|| || | || ||||||||| ||| ||||||||| || | || ||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
7073616 |
gatggtaattctttgatactagtgagttctaaatctaactcgtttatattctccgaggtcactgagaattccttcagtgctgtgcagttgtagagggaga |
7073715 |
T |
|
| Q |
312 |
gatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatccactcagatccaatttcttaagctttttcagagagaaaacaga |
411 |
Q |
| |
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||| ||||||||| |||| || |||||||||||||||||| | |||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
7073716 |
gataactaagggaacttaaatgagtattgctttgaaggcttttcagggaactgcatccactcagatccaatttctcaagatttttgagagagaaaacaga |
7073815 |
T |
|
| Q |
412 |
tggatggacactagtcaaccctacacagaattggaggtccattaccgcaagacttgtggcctttgaaagatctggtagc |
490 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||| ||||||||| |
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| T |
7073816 |
tggatggacactagtcaaccctacacaagattggaggtccaatactgcaagatttgtggcctttgaaaagtctggtagc |
7073894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 489
Target Start/End: Complemental strand, 7032918 - 7032440
Alignment:
| Q |
12 |
ctacattctctagtgacacacaaccaccagcatctagtgtttcaatcgatggaggaagctctggtaatgtttgaagctttctgcaatggtgtaagtctag |
111 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||| |||| | ||| ||| ||||||||||| |||||||||| |||||| |||| ||||| || |
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|
| T |
7032918 |
ctacattctctagtgatagacaaccacaagcatctagtatttctagtgattgagcaagctctggtagagtttgaagctcactgcaaaggtgcaagtccag |
7032819 |
T |
|
| Q |
112 |
atgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaacttttcaagtttggtttgaagtccaattgat |
211 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
7032818 |
atgtctcagccttgtaagattcctgatgcttttaggcaagctctgaatgtgagtgtgcgctagatataacttttcaagtttggtttgaagtccaattgat |
7032719 |
T |
|
| Q |
212 |
gagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggtcactgagaattccttcagtgctgtacaattgtagagggaga |
311 |
Q |
| |
|
||||| | | |||||||||||||| |||||||| |||| | ||||||| ||||||||||||||||||||||||| || ||| || ||||||||||||| |
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|
| T |
7032718 |
gagggtagatttttgatactcgtgccttctaaatccaatatgttcatatgttttgaggtcactgagaattccttcactgatgtgcagttgtagagggaga |
7032619 |
T |
|
| Q |
312 |
gatcactaagggagattaattgggt---attgctttgaaggcttgtaagggaaatgcatccactcagatccaatttcttaagctttttcagagagaaaac |
408 |
Q |
| |
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||| |||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||| |||| ||||| |
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| T |
7032618 |
gatacctaagggaacttaaatgggtgtcattgctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagcttttt--gagacaaaac |
7032521 |
T |
|
| Q |
409 |
agatggatggacactagtcaaccctacacagaattggaggtccattaccgcaagacttgtggcctttgaaagatctggtag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| || || ||||||||| ||||||||||| |||||||| |
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|
| T |
7032520 |
agatggatggacactagtcaaccctacacagagtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtag |
7032440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 7038616 - 7038134
Alignment:
| Q |
8 |
aactctacattctctagtgacacacaaccaccagcatctagtgtttcaatcgatggaggaagctctggtaatgtttgaagctttctgcaatggtgtaagt |
107 |
Q |
| |
|
||||||||||||| |||||| ||||||||| || || |||| |||| | |||| ||||||||||||||| |||| ||||| ||||||| || |
|
|
| T |
7038616 |
aactctacattctgtagtgatacacaaccaacaacagctagcatttctagcgattgaggaagctctggtagggttttaagctccctgcaataaaagaaac |
7038517 |
T |
|
| Q |
108 |
ctagatgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaacttttcaagtttggtttgaagtccaat |
207 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||| | ||||||| ||||||||||||| |
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|
| T |
7038516 |
ctagttgtctcagccttgtaagattcttgatgctcttaggcaagctctcaatgtgagtgcgtccaagatttaaaaatgtaagtttgctttgaagtccaat |
7038417 |
T |
|
| Q |
208 |
tgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggtcactgagaattccttcagtgctgtacaattgtagagg |
307 |
Q |
| |
|
||||||||| | || |||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||| || ||||||||| |
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|
| T |
7038416 |
tgatgagggtagttctttgatactcgtgccatctaaattcaatacgctcatatgctttgaagtcactgagaattccttcagtgctgtgcagttgtagagg |
7038317 |
T |
|
| Q |
308 |
gagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatccactcagatccaatttcttaagctttttcagagagaaaa |
407 |
Q |
| |
|
||||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| |||||||||| |
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|
| T |
7038316 |
gagagataactaagggaacttaaatgagtattgctttgaaggcttgtaagggaaatgcatccactcaaatccagtttctcaagatttttgagagagaaaa |
7038217 |
T |
|
| Q |
408 |
cagatggatggacactagtcaaccctacacagaattggaggtccattaccgcaagacttgtggcctttgaaagatctggtagc |
490 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| |
|
|
| T |
7038216 |
cagatggatgaacactagtcaaccctacacagaattggaggtccaagactgcgagacttgtggcctttgaaaagtctggtagc |
7038134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 7067115 - 7067263
Alignment:
| Q |
82 |
ttgaagctttctgcaatggtgtaagtctagatgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaac |
181 |
Q |
| |
|
||||||||| || ||||| |||| |||||||||||||| |||| |||| | ||||||||||||||||| |||||||| | ||||| ||| | ||| |
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|
| T |
7067115 |
ttgaagcttcctacaatgtcgtaattctagatgtctcagacttgaaaggcgcctgatgcttttaggcaagttctcaatgaaactgtgtgaaagaagcaac |
7067214 |
T |
|
| Q |
182 |
ttttcaagtttggtttgaagtccaattgatgagggcacttgtttgatac |
230 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
7067215 |
ttttcaagtttggtttgaagtcctattgatgatgacagttgtttgatac |
7067263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 7067371 - 7067461
Alignment:
| Q |
338 |
ttgctttgaaggcttgtaagggaaatgcatccactcagatccaatttcttaagctttttcagagagaaaacagatggatggacactagtca |
428 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||| ||||||||||||| |||||| |||||||| || |||||||| || | |||||||| |
|
|
| T |
7067371 |
ttgcttttgaggcttgtgagggaaaaacatccacctagatccaatttctcaagcttgttcagagaaaatacagatgggtgtatactagtca |
7067461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 4017011 - 4017088
Alignment:
| Q |
353 |
gtaagggaaatgcatccactcagatccaatttcttaagctttttcagagagaaaacagatggatggacactagtcaac |
430 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||| |||||||| ||||| |||| ||||||||| |||||||||||| |
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|
| T |
4017011 |
gtaagggaagtgcaatgactgagatccaatttctcaagcttttcaagagacaaaatagatggatgcacactagtcaac |
4017088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 3965281 - 3965225
Alignment:
| Q |
374 |
agatccaatttcttaagctttttcagagagaaaacagatggatggacactagtcaac |
430 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
3965281 |
agatccaatttctcaagattttctagagagaaaatagatggatgcacactagtcaac |
3965225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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