View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608-INSERTION-3 (Length: 132)

Name: NF1608-INSERTION-3
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608-INSERTION-3
NF1608-INSERTION-3
[»] chr4 (24 HSPs)
chr4 (59-119)||(55475315-55475375)
chr4 (59-117)||(19670634-19670692)
chr4 (59-117)||(29547877-29547935)
chr4 (59-119)||(50813808-50813868)
chr4 (59-117)||(18924413-18924471)
chr4 (59-114)||(17983664-17983719)
chr4 (59-117)||(29589658-29589716)
chr4 (59-117)||(32767082-32767140)
chr4 (59-117)||(47986332-47986389)
chr4 (59-117)||(44536664-44536722)
chr4 (59-115)||(40574903-40574959)
chr4 (81-117)||(55079641-55079677)
chr4 (59-113)||(6034168-6034222)
chr4 (65-117)||(29240016-29240068)
chr4 (59-119)||(41824006-41824066)
chr4 (65-117)||(50526089-50526141)
chr4 (81-116)||(8343092-8343127)
chr4 (59-113)||(41236471-41236525)
chr4 (59-113)||(42044289-42044343)
chr4 (60-113)||(48182971-48183024)
chr4 (60-119)||(17619195-17619254)
chr4 (66-117)||(31910323-31910374)
chr4 (70-117)||(50052346-50052393)
chr4 (70-113)||(53352496-53352539)
[»] chr8 (19 HSPs)
chr8 (59-118)||(32707920-32707979)
chr8 (59-114)||(16056322-16056377)
chr8 (59-118)||(32032848-32032907)
chr8 (59-113)||(24307715-24307769)
chr8 (59-113)||(30479396-30479450)
chr8 (59-113)||(34307340-34307394)
chr8 (72-115)||(16384026-16384069)
chr8 (65-120)||(8841347-8841402)
chr8 (59-114)||(40423864-40423919)
chr8 (66-117)||(43414499-43414550)
chr8 (65-118)||(37038609-37038662)
chr8 (65-117)||(10284549-10284601)
chr8 (65-117)||(42354506-42354558)
chr8 (59-113)||(504043-504097)
chr8 (59-113)||(12831171-12831225)
chr8 (59-113)||(23122519-23122573)
chr8 (61-117)||(30183794-30183850)
chr8 (92-120)||(40467857-40467885)
chr8 (65-116)||(5957960-5958011)
[»] chr7 (25 HSPs)
chr7 (59-118)||(38044321-38044380)
chr7 (59-119)||(22343485-22343545)
chr7 (59-117)||(8238337-8238395)
chr7 (59-115)||(41915865-41915921)
chr7 (59-115)||(7728030-7728086)
chr7 (59-123)||(32564338-32564402)
chr7 (72-117)||(40846031-40846076)
chr7 (66-119)||(46033717-46033770)
chr7 (66-117)||(21234532-21234583)
chr7 (66-117)||(46374742-46374793)
chr7 (59-113)||(4999436-4999490)
chr7 (66-117)||(31736008-31736059)
chr7 (66-117)||(35523007-35523058)
chr7 (72-118)||(12311041-12311087)
chr7 (59-113)||(19329966-19330020)
chr7 (59-113)||(32951415-32951469)
chr7 (59-113)||(36362138-36362192)
chr7 (59-113)||(38837341-38837395)
chr7 (59-113)||(40957831-40957885)
chr7 (59-116)||(2318160-2318217)
chr7 (59-108)||(19436114-19436163)
chr7 (65-113)||(8080305-8080353)
chr7 (70-118)||(26296779-26296827)
chr7 (65-117)||(41423812-41423864)
chr7 (72-115)||(39255844-39255887)
[»] chr6 (13 HSPs)
chr6 (59-118)||(4231672-4231731)
chr6 (59-118)||(15989959-15990018)
chr6 (59-117)||(30341278-30341336)
chr6 (59-117)||(15507942-15508000)
chr6 (59-113)||(17598678-17598732)
chr6 (66-119)||(31976379-31976432)
chr6 (71-118)||(22421996-22422043)
chr6 (66-117)||(31110679-31110730)
chr6 (59-113)||(11427742-11427796)
chr6 (59-113)||(22880580-22880634)
chr6 (65-115)||(28536408-28536458)
chr6 (59-113)||(29857951-29858005)
chr6 (65-117)||(31952948-31953000)
[»] chr1 (13 HSPs)
chr1 (59-119)||(50590916-50590976)
chr1 (59-117)||(5958918-5958976)
chr1 (59-117)||(47748566-47748624)
chr1 (59-120)||(41608408-41608469)
chr1 (59-119)||(44332287-44332347)
chr1 (66-119)||(32813378-32813431)
chr1 (65-118)||(51898600-51898653)
chr1 (59-113)||(27564657-27564711)
chr1 (59-113)||(37649322-37649376)
chr1 (59-113)||(41758929-41758983)
chr1 (59-113)||(48716204-48716258)
chr1 (69-118)||(6261004-6261053)
chr1 (66-117)||(45044478-45044529)
[»] chr2 (22 HSPs)
chr2 (59-118)||(43490245-43490304)
chr2 (59-117)||(13365477-13365535)
chr2 (59-114)||(2997408-2997463)
chr2 (59-118)||(3034900-3034959)
chr2 (59-117)||(38732478-38732536)
chr2 (65-121)||(20700945-20701001)
chr2 (59-117)||(45097653-45097711)
chr2 (61-117)||(17823914-17823970)
chr2 (66-117)||(40613820-40613871)
chr2 (59-113)||(40701602-40701656)
chr2 (69-117)||(3440113-3440161)
chr2 (69-121)||(3738077-3738129)
chr2 (59-115)||(41758711-41758767)
chr2 (59-113)||(4060809-4060863)
chr2 (59-113)||(10249304-10249358)
chr2 (59-113)||(19930742-19930796)
chr2 (59-113)||(30915587-30915641)
chr2 (74-116)||(44152066-44152108)
chr2 (66-119)||(36168967-36169020)
chr2 (66-117)||(2533254-2533305)
chr2 (59-106)||(33436029-33436076)
chr2 (66-117)||(42257324-42257375)
[»] chr5 (9 HSPs)
chr5 (59-117)||(2252086-2252144)
chr5 (59-117)||(3921183-3921241)
chr5 (59-117)||(39688815-39688873)
chr5 (59-113)||(35785323-35785377)
chr5 (65-115)||(35943812-35943862)
chr5 (66-117)||(15409528-15409579)
chr5 (65-117)||(31009118-31009170)
chr5 (59-113)||(18520806-18520860)
chr5 (69-116)||(6679832-6679879)
[»] chr3 (15 HSPs)
chr3 (59-117)||(42823235-42823293)
chr3 (59-117)||(45058471-45058529)
chr3 (59-117)||(36331247-36331305)
chr3 (63-117)||(30801651-30801705)
chr3 (66-117)||(51419278-51419329)
chr3 (60-117)||(35965700-35965757)
chr3 (65-117)||(33118768-33118820)
chr3 (66-117)||(20764833-20764884)
chr3 (66-117)||(26141448-26141499)
chr3 (59-113)||(54868817-54868871)
chr3 (65-117)||(35536756-35536808)
chr3 (66-117)||(41189682-41189733)
chr3 (65-117)||(8076523-8076575)
chr3 (69-117)||(26754829-26754877)
chr3 (66-117)||(11347840-11347891)
[»] scaffold0018 (1 HSPs)
scaffold0018 (59-116)||(152622-152679)
[»] scaffold0110 (1 HSPs)
scaffold0110 (59-117)||(8781-8839)
[»] scaffold0316 (1 HSPs)
scaffold0316 (70-117)||(17238-17285)
[»] scaffold0237 (1 HSPs)
scaffold0237 (59-113)||(4153-4207)
[»] scaffold1268 (1 HSPs)
scaffold1268 (65-116)||(848-899)
[»] scaffold1267 (1 HSPs)
scaffold1267 (65-116)||(848-899)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 1e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 55475315 - 55475375
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55475315 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 55475375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 19670692 - 19670634
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19670692 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 19670634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 29547935 - 29547877
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29547935 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 29547877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 50813868 - 50813808
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50813868 ctaatacatgagatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 50813808  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 18924471 - 18924413
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18924471 ctaatacatgaggtgtaaaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 18924413  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 17983719 - 17983664
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 114  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  17983719 ctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacattt 17983664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 29589716 - 29589658
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  29589716 ctaatacatgaggtgtacaagagtgtatgcaattaaaaggtgtctatgtaatattttcc 29589658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 32767082 - 32767140
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  32767082 ctaatacatagagtgtacaagggtgtatgcaattaaaatgtgtctatgtaacattttcc 32767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 47986332 - 47986389
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  47986332 ctaatacatgggatgtacaagggtgtatgcaatt-aaaggtgtctatgtaacattttcc 47986389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 44536722 - 44536664
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  44536722 ctaatacatagggtgtacaagaatgtatgcaattaaaatgtgtctatgtaacattttcc 44536664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 40574903 - 40574959
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    |||||| ||||||||||||||||||||||  | |||||||||||||| |||||||||    
T  40574903 ctaatatatggggtgtacaagggtgtatgagaataaaaggtgtctatctaacatttt 40574959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 55079677 - 55079641
Alignment:
Q  81 gtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||||||||||||||    
T  55079677 gtgtatgcaattaaaaggtgtctatgtaacattttcc 55079641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 6034168 - 6034222
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | ||||||||||||||||| ||||    
T  6034168 ctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 6034222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 29240016 - 29240068
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||| |||||||  | |||| |||||||||||||||||||||    
T  29240016 catggggtgtacaagagtgtatgggaataaagggtgtctatgtaacattttcc 29240068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 41824006 - 41824066
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    ||||| |||| ||||||||| ||||||||  | |||| |||||||||||||||||||||||    
T  41824006 ctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctatgtaacattttccat 41824066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 50526141 - 50526089
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  || |||| ||||| |||||||||||||||    
T  50526141 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcc 50526089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 8343127 - 8343092
Alignment:
Q  81 gtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8343127 gtgtatgcaattaaaaggtgtttatgtaacattttc 8343092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 41236471 - 41236525
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  41236471 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 41236525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 42044343 - 42044289
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||| |||||||||||||||| || |||| |||||||||||| ||||    
T  42044343 ctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 42044289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 48183024 - 48182971
Alignment:
Q  60 taatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  48183024 taatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 48182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 17619195 - 17619254
Alignment:
Q  60 taatacatggggtgtacaa--gggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    |||| ||||||||||||||  |||||||||  ||||||||||||  ||||||||||||||||    
T  17619195 taatgcatggggtgtacaatagggtgtatg--attaaaaggtgttcatgtaacattttccat 17619254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 31910323 - 31910374
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||| |||||||| |||||||  | |||| |||||||||||||||||||||    
T  31910323 atgggatgtacaagagtgtatgggaataaatggtgtctatgtaacattttcc 31910374  T

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Target: chr4; HSP #23
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 50052393 - 50052346
Alignment:
Q  70 ggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||| ||||||||  | |||| |||||||||||||||||||||    
T  50052393 ggtgtacaaaggtgtatgggaataaagggtgtctatgtaacattttcc 50052346  T

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Target: chr4; HSP #24
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 53352539 - 53352496
Alignment:
Q  70 ggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||||||||||| || |||| |||||||||||| ||||    
T  53352539 ggtgtacaagggtgtatgaaaataaagggtgtctatgtatcatt 53352496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 5e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 32707979 - 32707920
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32707979 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 32707920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 16056377 - 16056322
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16056377 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 16056322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 32032848 - 32032907
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32032848 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 32032907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 24307769 - 24307715
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307769 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 24307715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 30479450 - 30479396
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30479450 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 30479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 34307340 - 34307394
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34307340 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 34307394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 16384026 - 16384069
Alignment:
Q  72 tgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  16384026 tgtacaagggtgtatgcaattaaaaggtgtttatgtaacatttt 16384069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 8841402 - 8841347
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccatt 120  Q
    ||||||||||||||| |||||||  | |||| ||||||||||||||||||||||||    
T  8841402 catggggtgtacaagagtgtatgagaataaatggtgtctatgtaacattttccatt 8841347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 40423919 - 40423864
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 114  Q
    |||||||||| ||||||||||||||||||  | ||||||||||||||||| |||||    
T  40423919 ctaatacatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattt 40423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 43414550 - 43414499
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||    
T  43414550 atggggtgtacaagggtgtatggcaataaagggtgtctatgtaacattttcc 43414499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 37038609 - 37038662
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||||||||||||||||||  || |||| ||||| ||||||||||||||||    
T  37038609 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcca 37038662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 10284601 - 10284549
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||| |||||   | ||||||||||||||||||||||||||    
T  10284601 catggggtgtacaaggttgtataagaataaaaggtgtctatgtaacattttcc 10284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 42354558 - 42354506
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||| |||||||||||  | |||| |||||||||||||||||||||    
T  42354558 catggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcc 42354506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 504097 - 504043
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  504097 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 504043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 12831171 - 12831225
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  12831171 ctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcatt 12831225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 23122573 - 23122519
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  23122573 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 23122519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 30183850 - 30183794
Alignment:
Q  61 aatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||| |||||||||||||| ||||||| || |||| | ||||||| |||||||||||    
T  30183850 aatatatggggtgtacaagagtgtatgtaaataaaggatgtctatctaacattttcc 30183794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 40467857 - 40467885
Alignment:
Q  92 taaaaggtgtctatgtaacattttccatt 120  Q
    |||||||||||||||||||||||||||||    
T  40467857 taaaaggtgtctatgtaacattttccatt 40467885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 5957960 - 5958011
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    |||| ||||||||||||||||||  | |||| ||||| ||||||||||||||    
T  5957960 catgaggtgtacaagggtgtatgagaataaagggtgtttatgtaacattttc 5958011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 5e-26; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 38044321 - 38044380
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044321 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 38044380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 22343485 - 22343545
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22343485 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 22343545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 8238337 - 8238395
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8238337 ctaatacatggggtgtacaagggtgtatgcaattaaaaggcgtctatgtaacattttcc 8238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 41915865 - 41915921
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41915865 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 41915921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 7728030 - 7728086
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7728030 ctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacatttt 7728086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 32564402 - 32564338
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccattctt 123  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||| |||||    
T  32564402 ctaatacatgaggtgtacaagggtgtatgcaattaaaatatgtctatgtaacatcttcctttctt 32564338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 40846076 - 40846031
Alignment:
Q  72 tgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  40846076 tgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcc 40846031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 46033770 - 46033717
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||||    
T  46033770 atggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttccat 46033717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 21234532 - 21234583
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||| ||||||||  | ||||||||||||||||||||||||||    
T  21234532 atggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacattttcc 21234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 46374793 - 46374742
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||    
T  46374793 atggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcc 46374742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 4999490 - 4999436
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | ||||||||||||||||| ||||    
T  4999490 ctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 4999436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 31736008 - 31736059
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||||||| ||||| |||||||||||    
T  31736008 atggggtgtacaagggtgtatgggaataaaaggtatctatctaacattttcc 31736059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 35523007 - 35523058
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| ||||| |||||||||||||||    
T  35523007 atggggtgtacaagggtgtatgggaataaatggtgtttatgtaacattttcc 35523058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 12311041 - 12311087
Alignment:
Q  72 tgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||| |||||||| || |||| ||||||||||||||||||||||    
T  12311041 tgtacaaaggtgtatggaaataaagggtgtctatgtaacattttcca 12311087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 19329966 - 19330020
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  19329966 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 19330020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 32951469 - 32951415
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||||||||||||||||||||||  | |||  |||||||||||| ||||    
T  32951469 ctaatacatggggtgtacaagggtgtatgagaataaggggtgtctatgtatcatt 32951415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 36362138 - 36362192
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||||| ||||||||||||||||  | |||| |||||||||||| ||||    
T  36362138 ctaatacatgggatgtacaagggtgtatgagaataaagggtgtctatgtatcatt 36362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 38837341 - 38837395
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||| |||||||||||||||| || |||| |||||||||||| ||||    
T  38837341 ctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 38837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 40957831 - 40957885
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| ||||||||||||||||||||||| || |||  |||||||||||| ||||    
T  40957831 ctaatgcatggggtgtacaagggtgtatgaaaataatgggtgtctatgtatcatt 40957885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 2318217 - 2318160
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    ||||| ||||| |||||||| |||||||| || ||||  |||||||||||||||||||    
T  2318217 ctaatgcatggagtgtacaaaggtgtatggaaataaagtgtgtctatgtaacattttc 2318160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 19436163 - 19436114
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgta 108  Q
    ||||| |||||||||||||||||||||||  | |||| ||||||||||||    
T  19436163 ctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgta 19436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 8080353 - 8080305
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  8080353 catggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 8080305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 26296779 - 26296827
Alignment:
Q  70 ggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    |||||||||||||||||| || || | |||||||| |||||||||||||    
T  26296779 ggtgtacaagggtgtatggaaatatatggtgtctacgtaacattttcca 26296827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 41423812 - 41423864
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||| ||||||||  | |||| ||||| |||||||||||||||    
T  41423812 catggggtgtacaaaggtgtatgagaataaagggtgtttatgtaacattttcc 41423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 39255887 - 39255844
Alignment:
Q  72 tgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    ||||||||||||||||  | |||| |||||||||||||||||||    
T  39255887 tgtacaagggtgtatgataataaagggtgtctatgtaacatttt 39255844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 5e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 4231672 - 4231731
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4231672 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 4231731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 15990018 - 15989959
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15990018 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 15989959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 30341336 - 30341278
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341336 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 30341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 15508000 - 15507942
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15508000 ctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacattttcc 15507942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 17598678 - 17598732
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  17598678 ctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 17598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 31976379 - 31976432
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||||    
T  31976379 atggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttccat 31976432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 22422043 - 22421996
Alignment:
Q  71 gtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    |||||||||||||||||  | |||| ||||||||||||||||||||||    
T  22422043 gtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcca 22421996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 31110730 - 31110679
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||| |||||||| || |||| | |||||||||||||||||||    
T  31110730 atggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacattttcc 31110679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 11427742 - 11427796
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  11427742 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 11427796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 22880634 - 22880580
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    |||||||||||||||||||||||||||||  | |||| ||||| |||||| ||||    
T  22880634 ctaatacatggggtgtacaagggtgtatgggaataaatggtgtatatgtatcatt 22880580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 28536458 - 28536408
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    ||||||||||||||||||||||| || |||| | |||| ||||||||||||    
T  28536458 catggggtgtacaagggtgtatgaaaataaatgatgtcgatgtaacatttt 28536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 29857951 - 29858005
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  29857951 ctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 29858005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 31953000 - 31952948
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||| |||| ||||||  | |||| |||||||||||||||||||||    
T  31953000 catggggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 31952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 3e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 50590976 - 50590916
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50590976 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttccat 50590916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 5958976 - 5958918
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5958976 ctaatacatggggtgtacaagggtgtatgcaattaaaatgtgtctatgtaacattttcc 5958918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 47748566 - 47748624
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47748566 ctaatacatggggtgtacaagagtgtatgcaattaaaaggtgtctatgtaacattttcc 47748624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 41608469 - 41608408
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccatt 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41608469 ctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtttatgtaacattttccatt 41608408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 44332347 - 44332287
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44332347 ctaatacatagagtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttccat 44332287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 32813378 - 32813431
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||||    
T  32813378 atggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttccat 32813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 51898653 - 51898600
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||||||||||||||||||  || |||| ||||| ||||||||||||||||    
T  51898653 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcca 51898600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 27564711 - 27564657
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  27564711 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 27564657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 37649322 - 37649376
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  37649322 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 37649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 41758929 - 41758983
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  41758929 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 41758983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 48716258 - 48716204
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  48716258 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 48716204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 6261004 - 6261053
Alignment:
Q  69 gggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    |||||||||| |||||||| || |||| ||||| ||||||||||||||||    
T  6261004 gggtgtacaaaggtgtatgaaaataaatggtgtgtatgtaacattttcca 6261053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 45044529 - 45044478
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| | |||||| ||||||||||||    
T  45044529 atggggtgtacaagggtgtatgagaataaatgatgtctacgtaacattttcc 45044478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-23; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 43490245 - 43490304
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490245 ctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 43490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 13365477 - 13365535
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13365477 ctaatacatggggtgtacaagggtgaatgcaattaaaaggtgtctatgtaacattttcc 13365535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 2997463 - 2997408
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 114  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  2997463 ctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacattt 2997408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 3034959 - 3034900
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcca 118  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||    
T  3034959 ctaatacatgaggtgtaccaaggtgtatgcaattaaaaggtgtctatgtaacattttcca 3034900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 38732478 - 38732536
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38732478 ctaatacatgagatgtacaaggatgtatgcaattaaaaggtgtctatgtaacattttcc 38732536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 20700945 - 20701001
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccattc 121  Q
    |||||||||||||||||||||||  | |||| |||||||||||||||||||||||||    
T  20700945 catggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttccattc 20701001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 45097711 - 45097653
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||| || |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  45097711 ctaatacatcggatgtacaagagtgtatgcaattaaaagatgtttatgtaacattttcc 45097653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 17823914 - 17823970
Alignment:
Q  61 aatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||| |||||||||||||||||||||| || |||| | |||||||||||||||||||    
T  17823914 aatatatggggtgtacaagggtgtatgtaaataaaggatgtctatgtaacattttcc 17823970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 40613871 - 40613820
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||    
T  40613871 atggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcc 40613820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 40701602 - 40701656
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||    
T  40701602 ctaatgcatcgggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 40701656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 3440113 - 3440161
Alignment:
Q  69 gggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| |||||||| || |||| |||||||||||||||||||||    
T  3440113 gggtgtacaaaggtgtatggaaataaagggtgtctatgtaacattttcc 3440161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 3738077 - 3738129
Alignment:
Q  69 gggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccattc 121  Q
    |||||||||| |||||||| || || | |||||||||||||||||||||||||    
T  3738077 gggtgtacaaaggtgtatgaaaatatagggtgtctatgtaacattttccattc 3738129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 41758711 - 41758767
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    |||||| ||||||||||||||| ||||||  | ||||| ||||||||||||||||||    
T  41758711 ctaatatatggggtgtacaaggatgtatgagaataaaatgtgtctatgtaacatttt 41758767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 4060809 - 4060863
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| ||||||||||||||||||||||| || |||||| ||| |||||| ||||    
T  4060809 ctaatgcatggggtgtacaagggtgtatggaaataaaagatgtttatgtatcatt 4060863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 10249358 - 10249304
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  10249358 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 10249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 19930796 - 19930742
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||| ||||||||||||||||||  | ||||||||||||||||| ||||    
T  19930796 ctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 19930742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 30915587 - 30915641
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||||||||||||||||||||||||||| || |||  | |||||||||| ||||    
T  30915587 ctaatacatggggtgtacaagggtgtatggaaataatggatgtctatgtatcatt 30915641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 44152066 - 44152108
Alignment:
Q  74 tacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    ||||||||||||||| | |||||||||| ||||||||||||||    
T  44152066 tacaagggtgtatgcgaataaaaggtgtttatgtaacattttc 44152108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 36168967 - 36169020
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccat 119  Q
    |||||||||||||| |||||||  | |||| ||||| |||||||||||||||||    
T  36168967 atggggtgtacaagagtgtatgagaataaagggtgtttatgtaacattttccat 36169020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 2533254 - 2533305
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| ||||| ||| |||||||||||    
T  2533254 atggggtgtacaagggtgtatgggaataaagggtgtatatataacattttcc 2533305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 33436076 - 33436029
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatg 106  Q
    ||||| |||| ||||||||||||||||||  | |||||||||||||||    
T  33436076 ctaatgcatgaggtgtacaagggtgtatgagaataaaaggtgtctatg 33436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 42257324 - 42257375
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||| ||||||  || |||| ||||||||||||| |||||||    
T  42257324 atggggtgtacaagagtgtatagaaataaagggtgtctatgtaatattttcc 42257375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 5e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 2252144 - 2252086
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252144 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 2252086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 3921241 - 3921183
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3921241 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 3921183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 39688873 - 39688815
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39688873 ctaatacatagggtgtacaaaggtgtatgcaattaaaaggtgtctatgtaacattttcc 39688815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 35785323 - 35785377
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  35785323 ctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 35785377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 35943862 - 35943812
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 115  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  35943862 catggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatttt 35943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 15409579 - 15409528
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||| | |||| ||||| |||||||||||||||    
T  15409579 atggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacattttcc 15409528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 31009118 - 31009170
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||| ||||||||  | |||| |||||||||||||||||||||    
T  31009118 catggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttcc 31009170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 18520860 - 18520806
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||| |||||||||||||||||| || |||| |||||||||||| ||||    
T  18520860 ctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtctatgtatcatt 18520806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 6679832 - 6679879
Alignment:
Q  69 gggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    |||||||||||||||||||  | |||| | ||||||||||||||||||    
T  6679832 gggtgtacaagggtgtatgacaataaatgatgtctatgtaacattttc 6679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-23; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 42823235 - 42823293
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42823235 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 42823293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 45058529 - 45058471
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45058529 ctaatacatggggtgtacaatggtgtatgcaattaaaaggtgtctatgtaacattttcc 45058471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 36331305 - 36331247
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  36331305 ctaatacatggggtgtacaagggtgtatgcaattaaaagatgtatatgtaacattttcc 36331247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 30801705 - 30801651
Alignment:
Q  63 tacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  30801705 tacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 30801651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 51419329 - 51419278
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||||||    
T  51419329 atggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacattttcc 51419278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 35965757 - 35965700
Alignment:
Q  60 taatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||| |||| ||||||||||||||||||  | ||||||||||||||||||||||||||    
T  35965757 taattcatgaggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 35965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 33118820 - 33118768
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||| || |||| |||||||| ||||||||||||    
T  33118820 catggggtgtacaagggtgtatggaaataaagggtgtctacgtaacattttcc 33118768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 20764884 - 20764833
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||    
T  20764884 atggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 20764833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 26141499 - 26141448
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||||||| ||||||| || |||| |||||||||||||||||||||    
T  26141499 atggggtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcc 26141448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 54868871 - 54868817
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||    
T  54868871 ctaatgcatagggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 54868817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 35536756 - 35536808
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||| |||||||||||  | |||| |||||||||||||||||||||    
T  35536756 catggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcc 35536808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 41189733 - 41189682
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||| ||||||||| ||||||| || |||| |||||||||||||||||||||    
T  41189733 atggagtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcc 41189682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 8076523 - 8076575
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||||||||  |||||||  | |||| |||||||||||||||||||||    
T  8076523 catggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacattttcc 8076575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 26754829 - 26754877
Alignment:
Q  69 gggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| |||||||| || ||||  ||||||||||||||||||||    
T  26754829 gggtgtacaaaggtgtatggaaataaagagtgtctatgtaacattttcc 26754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 11347891 - 11347840
Alignment:
Q  66 atggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||||||| |||||||||||  | |||| |||||||||||| ||||||||    
T  11347891 atggggtgtataagggtgtatgggaataaagggtgtctatgtaccattttcc 11347840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 152622 - 152679
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  152622 ctaatacatgggatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 152679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 8839 - 8781
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  8839 ctaatatatggggtgtacaagggtgtataagaataaaaggtgtctatgtaacattttcc 8781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 17238 - 17285
Alignment:
Q  70 ggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 117  Q
    ||||||||| |||||||| || |||| |||||||||||||||||||||    
T  17238 ggtgtacaaaggtgtatggaaataaagggtgtctatgtaacattttcc 17285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 4153 - 4207
Alignment:
Q  59 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 113  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||    
T  4153 ctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 899 - 848
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    ||||||||||||||| |||||||  | |||| ||||| ||||||||||||||    
T  899 catggggtgtacaagagtgtatgggaataaagggtgtttatgtaacattttc 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 899 - 848
Alignment:
Q  65 catggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 116  Q
    ||||||||||||||| |||||||  | |||| ||||| ||||||||||||||    
T  899 catggggtgtacaagagtgtatgggaataaagggtgtttatgtaacattttc 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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