View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608-INSERTION-4 (Length: 343)
Name: NF1608-INSERTION-4
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608-INSERTION-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 35694118 - 35693778
Alignment:
| Q |
8 |
ctaagcgaattatgcaggaacttgtattgtagcttggggcgcaagtttgcacatttgctgaaattgttattagatgagagattgtgaatagtatagcaga |
107 |
Q |
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| T |
35694118 |
ctaagcgaattatgcaggaacttgtattgtagcttggggcgcaagtttgcacatttgctgaaattgtta---gatgagagattgtgaatagtatagcaga |
35694022 |
T |
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| Q |
108 |
tgattagtttggataggctttagttagtttctaatgtaataagctaacaataatgca----actaagagaaagttataaggaaatttccaatcctctccc |
203 |
Q |
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| T |
35694021 |
tgattagtttggataggctttagttagtttctaatgtaataagctaacaataatgcatgcaactaagagaaagttataaggaaatttccaatcctctccc |
35693922 |
T |
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| Q |
204 |
ctattatgaaccaaattccctccctcttttgcatcacaaaattttctttcgctaactc----aagctctctggaaaatgctcatggttttctcaacagca |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
35693921 |
ctattatgaaccaaactccctccctcttttgcatcacaaaattttctttcactaactcaagcaagctctctggaaaatgctcttggttttctcaacagca |
35693822 |
T |
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| Q |
300 |
tcagccacttttcatcaannnnnnncttcaggatctataagctt |
343 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
35693821 |
tcagccacttttcatcaatttttttcttcaggatctataagctt |
35693778 |
T |
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