View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608-INSERTION-5 (Length: 830)
Name: NF1608-INSERTION-5
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608-INSERTION-5 |
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Alignment Details
Target: chr8 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Original strand, 38954042 - 38954859
Alignment:
| Q |
8 |
attttatgtgcattgtatgataaattatctaatcttaaacataatgtgtgtattcactgacacattgataaattttagtatgttt--attgatagtgttt |
105 |
Q |
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| T |
38954042 |
attttatgtgcattgtatgataaattatctaatcttaaacataatgtgt--attcactgacacattgataaattttagtatgtttctatcgatagtgttt |
38954139 |
T |
|
| Q |
106 |
ggtttgcaagaaaaactctaagtctgtcagttttctcgttttatcaggccttccatggtcaggaagtcagatgtccggttcatttacatcaagtgggaaa |
205 |
Q |
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| T |
38954140 |
ggtttgcaagaaaaactctaagtctgtcagttttcttgttttatcaggccttccatggtcaggaagtcagatgtccggttcatttacatcaagtgggaaa |
38954239 |
T |
|
| Q |
206 |
catataatttcagtcggagaggactcacacgtgtatatttggaacttcaatgacttcgaaagtggttcttcgnnnnnnncgaaatcggactattcttgtg |
305 |
Q |
| |
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| T |
38954240 |
catataatttcagtcggagaggactcacacgtgtatatttggaacttcaatgacttcaaaagtggttcttcgaaaaaaacgaaatcggactattcttgtg |
38954339 |
T |
|
| Q |
306 |
agtacttttccttcaagggcgtaactgttgcaataccttggtgtggcatgaaaacagatagacgtggctgtagaattaacttttctcactattctccgga |
405 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954340 |
agtacttttccttcaagggtgtaactgttgcaataccttggtgtggcatgaaaacagatagacgtggctgtagaattaacttttctcactattctccgga |
38954439 |
T |
|
| Q |
406 |
agcaaaaagcaagctagaggttgcttctgaggttagagatacagaacgattttctcttggtaattggttcttcattgatggtacatgccgaggttctact |
505 |
Q |
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| T |
38954440 |
agcaaaaagcaagctagaggttgcttctgaggttagagatacagaacgattttctcttggtaattggttcttcattgatggtacatgccgaggttctact |
38954539 |
T |
|
| Q |
506 |
tctatgacatggcctgaggagaaacttccaacatgggatttacctcttgtagaagatgaatgtgatcatcaaaatttatgtcacgaagatagtagccatg |
605 |
Q |
| |
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| T |
38954540 |
tctatgacatggcctgaggagaaacttccaacatgggatttacctcttgtagaagatgaatgtgatcatcaaaatttatgtcacgaagatagtagccatg |
38954639 |
T |
|
| Q |
606 |
gaaggaatatatcanaaacatggggtctaacaatagtagcagctggcagtgatggaactatc-agacattccacaattttggcttgcctgttaagctcta |
704 |
Q |
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| T |
38954640 |
gaaggaatatatcagaaacatggggtctaacaatagtagcagctggcagtgatggaactatcaagacattccacaattttggcttgcctgttaggctcta |
38954739 |
T |
|
| Q |
705 |
ggacaatgccatgttgattgttttcaatttttcatgacaagttttggc--------agtgtaaattttcacgtggtggccttagattctaagtataataa |
796 |
Q |
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| T |
38954740 |
ggacaatgccatgttgattgttttcaatttttcatgagaagttttggctcggtaaaggtgtaaattttcacgtggtggccttagattctaagtataataa |
38954839 |
T |
|
| Q |
797 |
gtggcttagaattatggaag |
816 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
38954840 |
gttgcttagaattatggaag |
38954859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 43763511 - 43763626
Alignment:
| Q |
150 |
caggccttccatggtcaggaagtcagatgtccggttcatttacatcaagtgggaaacatataatttcagtcggagaggactcacacgtgtatatttggaa |
249 |
Q |
| |
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|||||||| || |||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||| |
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| T |
43763511 |
caggcctttcaatgtcaggaagtcagatgtctggttcatttacatcaagtggaaaacacataatttcagtcggagaggactctcgtgtgtatatttggaa |
43763610 |
T |
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| Q |
250 |
cttcaatgacttcgaa |
265 |
Q |
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| T |
43763611 |
cttcaatgactccgaa |
43763626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 566
Target Start/End: Original strand, 43763795 - 43763906
Alignment:
| Q |
449 |
gaacgattttctcttggtaattggttcttcattgatggtacatgccgaggttctacttctatgacatggcctgaggagaaacttccaacatgggatttac |
548 |
Q |
| |
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||||| |||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||| || ||||||||||| | ||||||| || |
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| T |
43763795 |
gaacgtttttcttttggtagttggttctccattgatggttcatgccgagg------ttctatgacatggcccgaagagaaacttcccagttgggattcac |
43763888 |
T |
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| Q |
549 |
ctcttgtagaagatgaat |
566 |
Q |
| |
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| T |
43763889 |
ctctttcagaagttgaat |
43763906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 43763659 - 43763717
Alignment:
| Q |
298 |
ttcttgtgagtacttttccttcaagggcgtaactgttgcaataccttggtgtggcatga |
356 |
Q |
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|||||||||||||||| || |||||| || ||||||||||||||||||| ||||||| |
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| T |
43763659 |
ttcttgtgagtactttcgctccaagggggttactgttgcaataccttggtcaggcatga |
43763717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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