View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608-INSERTION-6 (Length: 251)
Name: NF1608-INSERTION-6
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608-INSERTION-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 21490352 - 21490595
Alignment:
| Q |
8 |
catagttgcggaggagcagatatttgggcggacattacaagtagtggtgaggtattctgttcagctggatcatactgtccatctacaaccataaaaagtc |
107 |
Q |
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| T |
21490352 |
catagttgcggaggagccgatatttgggcagacattacaagtagtggtgaggtattctgttcagcaggatcatactgtccatctacaaccataaaaagtc |
21490451 |
T |
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| Q |
108 |
catgcagtagagggtattcatatttttccctcaacttctacttccaacattaattatattagcaattgttatgttagcatatttcaccttactaggattc |
207 |
Q |
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| T |
21490452 |
catgcagtagagggtattcatatttttccctcaacttctacttccaacattaattatattagcaattgttatgttagcatatttcaccttactaggattc |
21490551 |
T |
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| Q |
208 |
gaaccttgaacctttaactcctttaatcccttagctcaaaccag |
251 |
Q |
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| T |
21490552 |
gaaccttgaacctttaactcctttaatcccttagctcaaaccag |
21490595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 28485998 - 28485961
Alignment:
| Q |
214 |
tgaacctttaactcctttaatcccttagctcaaaccag |
251 |
Q |
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| T |
28485998 |
tgaacccttaactcctttaatcacttagctcaaaccag |
28485961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 48323851 - 48323892
Alignment:
| Q |
201 |
aggattcgaaccttgaacctttaactcctttaatcccttagc |
242 |
Q |
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| T |
48323851 |
aggattcgaaccctggacctttaactcctttaaacccttagc |
48323892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 5446329 - 5446380
Alignment:
| Q |
194 |
ccttactaggattcgaaccttgaacctttaactcctttaatcccttagctcaa |
246 |
Q |
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| T |
5446329 |
ccttactaggattcgaaccttgaa-ctttaactcctttaatcatttagctcaa |
5446380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 18722289 - 18722215
Alignment:
| Q |
171 |
aattgttatgttagcatatttcaccttactaggattcgaaccttgaacctttaactcctttaatcccttagctcaa |
246 |
Q |
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| T |
18722289 |
aattgttatgttagcattttctcccttgccaggattcaaaccctgaacctttaact-ctttaatcccttagctcaa |
18722215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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