View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1608-INSERTION-7 (Length: 532)
Name: NF1608-INSERTION-7
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608-INSERTION-7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 41653368 - 41653893
Alignment:
| Q |
8 |
tatgctacccttatgttgagtagagttaaacacaaatgagaaaccaagccaagcagtgaaaatttctttcttatcataaatgtaaaatccttgagcacga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653368 |
tatgctacccttatgttgagtagagttaaacacaaatgagaaaccaagccaagcagtgaaaatttctttcttatcataaatgtaaaatccttgagcacga |
41653467 |
T |
|
| Q |
108 |
ccaattgggcgtgagtgtaagttattgtccaaagtgattggatcatcaaaaacaaccaaatcaccaaaatggttttggtttgccaatatggttcggttac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653468 |
ccaattgggcgtgagtgtaagttattgtccaaagtgattggatcatcaaaaacaaccaaatcaccaaaatggttttggtttgccaatatggttcggttac |
41653567 |
T |
|
| Q |
208 |
cccatgctggtgtgcctacaattgctgatgtagcatttttggagttgtgaccgttgtaaataatgtcatgaaaataaaacactaatctcttgcatggttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653568 |
cccatgctggtgtgcctacaattgctgatgtagcatttttggagttgtgaccgttgtaaataatgtcatgaaaataaaacactaatctcttgcatggttc |
41653667 |
T |
|
| Q |
308 |
atgaacacgagccctttttcttgatctggttggagtggcagatgaatatgtcaatgagattaggagtaagaagaagaggagtgttgaaatgagcttcatt |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41653668 |
atgaacacgatccctttttcttgatctggttggagtggcagatgaatatgtcaatgagattaggagtaagaagaagaggagagttgaaatgagcttcatt |
41653767 |
T |
|
| Q |
408 |
tcctcc----------ttcaatattgttaattggttttacctaatagtgtggaggctatgacttatgagttcatgaagttgatatttataagcggttgtg |
497 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653768 |
tcctccttcaattcttttcaatattgttaattggttttatctaatagtttggaggctatgacttatgagttcatgaagttgatatttataagcggttgtg |
41653867 |
T |
|
| Q |
498 |
caccaaaagcataaactatgttgcaa |
523 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41653868 |
caccaaaagcataaactatgttgcaa |
41653893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University