View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16080_high_2 (Length: 505)
Name: NF16080_high_2
Description: NF16080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16080_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 489
Target Start/End: Complemental strand, 19733881 - 19733414
Alignment:
| Q |
4 |
cataggcataattatattcagtatttcacagcttgaaagtctaccattcttttttagtagttggcattttcttgttcaactatcaacatgtaacttcact |
103 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19733881 |
cataggcataattatattcagcatttcacagcttgaaagtctaccattcttttttagtagttggcattttcttgttcaactatcaacatgtaacttcact |
19733782 |
T |
|
| Q |
104 |
atcaagagttcaat-cccttgaatgtaaaactaccaaaattgaataagtgtgtaccaatgacaaaggaaagtgagaaattttgggaaaatgagttcagat |
202 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19733781 |
atcaagagttcaattcccttgaatgtaaaactaccaaaattgaataagtgtgtaccaatgacaaaggaaagtgag------------------ttcagat |
19733700 |
T |
|
| Q |
203 |
atggtccattgaaatagttaattgagaaannnnnnnnnnnctcaattgaagaatacatttcccaatatatgctctatttttcttattccatgtgcattaa |
302 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19733699 |
atggtcaattgaaatagttaattgagaaatttttttttt-ctcaattgaagaatacatttcccaatatatgctctatttttcttattccatgtgcattaa |
19733601 |
T |
|
| Q |
303 |
tacacaagatgcttactctacttacaataagacatgtcatttcacattcaattttgttaaacattgtattcacctcacaaaagatgcttattctagagaa |
402 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19733600 |
tacacaagatgcttactctacttataataagacatgtcatttcacattcaattttgttaaacattgtattcacctcacacaagatgcttattctagagaa |
19733501 |
T |
|
| Q |
403 |
accacattgggtgttatagatcatgaatttgcactagcaagtaattgaaaggaagggttgtcttgtctctactatttatgctgactc |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19733500 |
accacattgggtgttatagatcatgaatttgcactagcaagtaattgaaaggaagggttgtcttgtctctactatttatgctgactc |
19733414 |
T |
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