View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16080_high_4 (Length: 394)
Name: NF16080_high_4
Description: NF16080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16080_high_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 13657351 - 13656971
Alignment:
| Q |
16 |
gaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatggg |
115 |
Q |
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| T |
13657351 |
gaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatggg |
13657252 |
T |
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| Q |
116 |
gcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaattta |
213 |
Q |
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| T |
13657251 |
gcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatcta |
13657152 |
T |
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| Q |
214 |
atgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13657151 |
atgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
13657052 |
T |
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| Q |
314 |
gatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgc |
394 |
Q |
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| T |
13657051 |
gatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgc |
13656971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 13715993 - 13715613
Alignment:
| Q |
16 |
gaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatggg |
115 |
Q |
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| T |
13715993 |
gaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatggg |
13715894 |
T |
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| Q |
116 |
gcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaattta |
213 |
Q |
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| T |
13715893 |
gcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatcta |
13715794 |
T |
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| Q |
214 |
atgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
313 |
Q |
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| T |
13715793 |
atgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
13715694 |
T |
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| Q |
314 |
gatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgc |
394 |
Q |
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| T |
13715693 |
gatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgc |
13715613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 26765152 - 26765191
Alignment:
| Q |
205 |
taaaatttaatgaaaaataatttttgttggtagatctaaa |
244 |
Q |
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| T |
26765152 |
taaaatttaatgaaaaataatttttgttggtgggtctaaa |
26765191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 18732352 - 18732314
Alignment:
| Q |
198 |
ttgtttgtaaaatttaatgaaaaataat-ttttgttggt |
235 |
Q |
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| T |
18732352 |
ttgtttgtaaaatttaatgaaaaataatgttttgttggt |
18732314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 41872428 - 41872461
Alignment:
| Q |
198 |
ttgtttgtaaaatttaatgaaaaataatttttgt |
231 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
41872428 |
ttgtttataaaatttaatgaaaaataatttttgt |
41872461 |
T |
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