View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16080_high_6 (Length: 335)

Name: NF16080_high_6
Description: NF16080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16080_high_6
NF16080_high_6
[»] scaffold0003 (4 HSPs)
scaffold0003 (191-320)||(15218-15347)
scaffold0003 (191-320)||(29364-29493)
scaffold0003 (19-135)||(15047-15163)
scaffold0003 (19-135)||(29193-29309)
[»] chr7 (3 HSPs)
chr7 (191-320)||(16426505-16426634)
chr7 (19-135)||(16426334-16426450)
chr7 (19-125)||(11564700-11564806)
[»] chr1 (3 HSPs)
chr1 (19-70)||(17617502-17617553)
chr1 (33-63)||(15929898-15929928)
chr1 (33-62)||(15182949-15182978)
[»] chr4 (1 HSPs)
chr4 (33-67)||(12880917-12880951)
[»] chr2 (1 HSPs)
chr2 (42-111)||(29529373-29529442)


Alignment Details
Target: scaffold0003 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 15218 - 15347
Alignment:
Q  191 tccacacctagggctaagggtatgtgccttgcatttatctcacgtgtcccatgcacattggatagggacgatttctctctgtcagataccacgtgccccg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||| |||||||||||     
T  15218 tccacacctagggctaagggtatgtgccttgcatttatctcacgcgccccatgcgcattggatagggacgttttctctctgtcagatgccacgtgcccca 15317  T
Q  291 aacatagcctcacgtatcccacattctctg 320  Q
    ||||||||||||||||||||||||||||||    
T  15318 aacatagcctcacgtatcccacattctctg 15347  T

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Target: scaffold0003; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 29364 - 29493
Alignment:
Q  191 tccacacctagggctaagggtatgtgccttgcatttatctcacgtgtcccatgcacattggatagggacgatttctctctgtcagataccacgtgccccg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||| |||||||||||     
T  29364 tccacacctagggctaagggtatgtgccttgcatttatctcacgcgccccatgcgcattggatagggacgttttctctctgtcagatgccacgtgcccca 29463  T
Q  291 aacatagcctcacgtatcccacattctctg 320  Q
    ||||||||||||||||||||||||||||||    
T  29464 aacatagcctcacgtatcccacattctctg 29493  T

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Target: scaffold0003; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 15047 - 15163
Alignment:
Q  19 gtaattcggttaggaagacacctcatggaagttttggaagacatgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  15047 gtaattcggttaggaagacacctcatggaagttttggaagacatggaataaatattaggaagtttcaataaatatttaaagacattacaagttagaaata 15146  T
Q  119 ttttgtctgaagtccct 135  Q
    |||||||| ||||||||    
T  15147 ttttgtctcaagtccct 15163  T

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Target: scaffold0003; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 29193 - 29309
Alignment:
Q  19 gtaattcggttaggaagacacctcatggaagttttggaagacatgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  29193 gtaattcggttaggaagacacctcatggaagttttggaagacatggaataaatattaggaagtttcaataaatatttaaagacattacaagttagaaata 29292  T
Q  119 ttttgtctgaagtccct 135  Q
    |||||||| ||||||||    
T  29293 ttttgtctcaagtccct 29309  T

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Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 16426505 - 16426634
Alignment:
Q  191 tccacacctagggctaagggtatgtgccttgcatttatctcacgtgtcccatgcacattggatagggacgatttctctctgtcagataccacgtgccccg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||| |||||||||||     
T  16426505 tccacacctagggctaagggtatgtgccttgcatttatctcacgcgccccatgcgcattggatagggacgttttctctctgtcagatgccacgtgcccca 16426604  T
Q  291 aacatagcctcacgtatcccacattctctg 320  Q
    ||||||||||||||||||||||||||||||    
T  16426605 aacatagcctcacgtatcccacattctctg 16426634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 16426334 - 16426450
Alignment:
Q  19 gtaattcggttaggaagacacctcatggaagttttggaagacatgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  16426334 gtaattcggttaggaagacacctcatggaagttttggaagacatggaataaatattaggaagtttcaataaatatttaaagacattacaagttagaaata 16426433  T
Q  119 ttttgtctgaagtccct 135  Q
    |||||||| ||||||||    
T  16426434 ttttgtctcaagtccct 16426450  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 11564806 - 11564700
Alignment:
Q  19 gtaattcggttaggaagacacctcatggaagttttggaagacatgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaata 118  Q
    ||||| ||| |||||||||||||||| || |||||||| || ||| ||| ||||||||||| |||||||||| |||| |||||||||||| ||||||||     
T  11564806 gtaatacggctaggaagacacctcatagaggttttggacgatatggaatgaatattagtaaatttcaataaagatttgaagacattacaagttagaaatt 11564707  T
Q  119 ttttgtc 125  Q
    |||||||    
T  11564706 ttttgtc 11564700  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 17617502 - 17617553
Alignment:
Q  19 gtaattcggttaggaagacacctcatggaagttttggaagacatgaaataaa 70  Q
    |||||||||  || |||||  |||||||||||||||||||||||||||||||    
T  17617502 gtaattcggcaagcaagacgtctcatggaagttttggaagacatgaaataaa 17617553  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 15929898 - 15929928
Alignment:
Q  33 aagacacctcatggaagttttggaagacatg 63  Q
    |||||||||||||||||||||||||||||||    
T  15929898 aagacacctcatggaagttttggaagacatg 15929928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 15182949 - 15182978
Alignment:
Q  33 aagacacctcatggaagttttggaagacat 62  Q
    ||||||||||||||||||||||||||||||    
T  15182949 aagacacctcatggaagttttggaagacat 15182978  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 12880951 - 12880917
Alignment:
Q  33 aagacacctcatggaagttttggaagacatgaaat 67  Q
    |||||||||||||||| ||||||||||||||||||    
T  12880951 aagacacctcatggaaattttggaagacatgaaat 12880917  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 29529442 - 29529373
Alignment:
Q  42 catggaagttttggaagacatgaaataaatattagtaagtttcaataaatatttaaagacattacaaatt 111  Q
    |||| ||||||||||||||||||||| || ||||  ||| ||||||||   ||| |||||||||||||||    
T  29529442 catgaaagttttggaagacatgaaatgaagattatcaaggttcaataaggctttgaagacattacaaatt 29529373  T

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