View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16080_low_11 (Length: 213)
Name: NF16080_low_11
Description: NF16080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16080_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 5742131 - 5742325
Alignment:
| Q |
18 |
gtccatatatttaacctcttactattaatcaggtctttacattttaaaaagttacaatgaatttggtgtataaca---------taacatactctcaaaa |
108 |
Q |
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| T |
5742131 |
gtccatatatttaacctcttactattaatcaggtctttacattttaaaaagttacagtgaatttggtgtataacataacattattaacatactctcgaaa |
5742230 |
T |
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| Q |
109 |
tgaacctctttcannnnnnncatcaatgtaaaacgaatacgtgtatcttactatgc--atatatttgcaagtgaattttcttctcttttcttttc |
201 |
Q |
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| T |
5742231 |
tgaacctctttcatttttttcatcaatgtaaaacgaatacgtgtatcttactatgcatatatatttgcaagtgaattttcttctcttttcttttc |
5742325 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 28410803 - 28410737
Alignment:
| Q |
18 |
gtccatatatttaacctcttactattaatcaggtctttacattttaaaaagttacaatgaatttggt |
84 |
Q |
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|||| ||||||||||| || ||||| |||||||||| || ||||||| ||||||| || |||||||| |
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| T |
28410803 |
gtccctatatttaaccactaactatcaatcaggtctctatattttaacaagttactatcaatttggt |
28410737 |
T |
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